Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P07
         (401 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0115 - 12660216-12661010                                         29   1.4  
01_03_0125 + 12739814-12740273,12740941-12740948                       28   2.4  
05_05_0093 + 22336593-22337198,22338123-22339076                       28   3.2  
11_06_0750 + 26917239-26918071,26918319-26920773                       27   7.3  
02_01_0091 + 646299-649082                                             27   7.3  
05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718     26   9.7  
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204...    26   9.7  
03_06_0317 + 33097257-33097336,33098500-33098926,33100007-331000...    26   9.7  
02_04_0453 + 23053621-23054167,23054867-23054958,23055085-230551...    26   9.7  

>01_03_0115 - 12660216-12661010
          Length = 264

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 225 RTRASGAIPPSAGYAPCSHNLGVALHQQTLDPIY 124
           R  +S ++PP+A  A   HNL V  H+  +DP+Y
Sbjct: 39  RRISSSSLPPAAAAA---HNLFVCNHRSLVDPLY 69


>01_03_0125 + 12739814-12740273,12740941-12740948
          Length = 155

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 282 CAGNNDAVSESRGDSAKACRTRASGAIP 199
           C G  DAV  + GDS  +C + A+ A P
Sbjct: 71  CTGVVDAVEAAAGDSGSSCSSPATSASP 98


>05_05_0093 + 22336593-22337198,22338123-22339076
          Length = 519

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 210 GAIPPSAGYAPCSHNLGVALHQQTLDPI 127
           GA PP+A   P S  L V  H+  +DP+
Sbjct: 292 GAPPPAAASGPASGVLFVCTHRTLMDPV 319


>11_06_0750 + 26917239-26918071,26918319-26920773
          Length = 1095

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 210 GAIPPSAGYAPCSHNLGVALHQQTL 136
           G   P +G APCSH  G      TL
Sbjct: 371 GPACPGSGSAPCSHGSGYVYQMNTL 395


>02_01_0091 + 646299-649082
          Length = 927

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 208 TRRAGTARLCRISSRFTDCVIISCTQLLRLVQFSLCYYVVTHTHIY 345
           TR   TARL   +       I+ C    + V F+L Y V+   H Y
Sbjct: 278 TRIRNTARLLITNPDMLHMSILPCHAQFKRVLFNLKYIVIDEAHSY 323


>05_03_0321 + 12363355-12363614,12363689-12364145,12364165-12365718
          Length = 756

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 185 YPADGGMAPDARVRHAFAESPLDSLTASL 271
           Y  + GM PD   RHA  +  LD L   L
Sbjct: 219 YGLERGMTPDPSARHAHRQGDLDLLIKRL 247


>04_04_1694 - 35419278-35419565,35419744-35419861,35420404-35420490,
            35420909-35420931,35421647-35421843,35421964-35422159,
            35422382-35422481,35423288-35423374,35424053-35424282,
            35424678-35424763,35425148-35425271,35425415-35428573,
            35430014-35430019
          Length = 1566

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 108  NIYWCSR*-DQVFVGVARHLGCEN 176
            NI++C R   ++F+G+  H+G EN
Sbjct: 1115 NIWFCGRYCKEIFIGLHNHVGIEN 1138


>03_06_0317 +
           33097257-33097336,33098500-33098926,33100007-33100078,
           33100490-33100600,33100973-33101173,33102157-33102222
          Length = 318

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 255 ESRGDSAKACRT-RASGAIPPSAGYAPCSHNLGVALHQQTLDPIYYTNKYYIRIFI 91
           E+   +A + R+ R S A P  A    CS   GVA   + + P+ +TN    R+ I
Sbjct: 255 EAANTTAASSRSHRHSIANPKDANRVQCSPKNGVAAKTRAVKPLKWTNINISRVDI 310


>02_04_0453 +
           23053621-23054167,23054867-23054958,23055085-23055149,
           23058558-23059086
          Length = 410

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 201 PPSAGYAPCSHNLGVALHQQTLDP 130
           PP +GY   ++  GVA+   TL+P
Sbjct: 204 PPGSGYRALAYTRGVAVSAVTLEP 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,711,437
Number of Sequences: 37544
Number of extensions: 191136
Number of successful extensions: 477
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)