Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P07
         (401 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49908-5|CAA90096.1|  353|Caenorhabditis elegans Hypothetical pr...    30   0.71 
Z81581-7|CAB04659.1|  269|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF125463-2|AAD12867.2|  167|Caenorhabditis elegans Hypothetical ...    28   2.2  
AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical...    26   8.8  

>Z49908-5|CAA90096.1|  353|Caenorhabditis elegans Hypothetical
           protein C07E3.5 protein.
          Length = 353

 Score = 29.9 bits (64), Expect = 0.71
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 282 CAGNNDAVSESRGDSAKACRTRASGAIPPSAGYAPC 175
           C G  DA+S   GDS K      S ++PP A   PC
Sbjct: 68  CKG--DAISFHFGDSGKVVSISVSSSLPPDAKSIPC 101


>Z81581-7|CAB04659.1|  269|Caenorhabditis elegans Hypothetical
           protein T02E1.7 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = +1

Query: 256 TDCVIISCTQLLRLVQFSLCYYVVTHTHIYILFITYILICILW 384
           T  ++ +C   L L+  S+ ++ +++T I +  I+Y ++  +W
Sbjct: 157 TSVLLAACRVCLNLMLISMVHFDMSYTRILLCIISYGMMIFVW 199


>AF125463-2|AAD12867.2|  167|Caenorhabditis elegans Hypothetical
           protein Y49F6C.7 protein.
          Length = 167

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 299 TRRNNCVQEIMTQ-SVNREEIRQRRAVPARLV 207
           T RN  V +I  Q  +NR+EIR R    ARL+
Sbjct: 19  TPRNELVAQIQVQLDINRQEIRAREREQARLL 50


>AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical
           protein Y57A10A.15 protein.
          Length = 1072

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +2

Query: 221 VRHAFAESPLDSLTASLFPAHNYCVSCNLVC 313
           +R +F + P++ +     P  +YC   N++C
Sbjct: 296 MRASFVKDPIEQIREDFQPLMSYCARDNILC 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,779,572
Number of Sequences: 27780
Number of extensions: 182607
Number of successful extensions: 513
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)