Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P06
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0139 - 1660382-1660729,1660826-1661008,1662122-1663057,166...    31   0.45 
10_01_0138 + 1657028-1657489                                           28   4.2  
10_01_0140 - 1674305-1674586,1674683-1674838,1675676-1676622,167...    28   5.6  
08_01_0601 - 5268520-5271112,5272448-5272950                           28   5.6  
09_02_0331 - 7324332-7325924,7327220-7327402                           27   7.4  
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029...    27   7.4  

>10_01_0139 -
           1660382-1660729,1660826-1661008,1662122-1663057,
           1667929-1668084,1669081-1669971
          Length = 837

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +1

Query: 373 SKTSVKTCMTDKYSRSSWRF*PETKLD----VPEVTQSDEGQRQKLSVVLRAVNRVL 531
           S+ +V+TC+  +  R  WR  P    D    +P+     EG++ K+ V    VNR+L
Sbjct: 410 SRQAVRTCVLSRRWRDLWRSVPRVHADICDLIPDRIIDVEGEKAKMVVFNSFVNRLL 466


>10_01_0138 + 1657028-1657489
          Length = 153

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -2

Query: 531 QNPVHCSQHDRQLLTLPFVRLRHLRHVQLGLRS--EPPGASGVLVRHTGLH*CL*R 370
           Q PV  S   R+ LT+   R+RHL  + +G+ +    P  +  L +H  LH CL R
Sbjct: 40  QQPVDKSLEQRRRLTVSRFRMRHLELLVIGVDAGHGAPEVAPPLGQHARLH-CLAR 94


>10_01_0140 -
           1674305-1674586,1674683-1674838,1675676-1676622,
           1678976-1679054,1679168-1679207,1679580-1679767,
           1679869-1680024,1680752-1681713,1681866-1681914
          Length = 952

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
 Frame = +1

Query: 373 SKTSVKTCMTDKYSRSSWRF*PETKLDV----PEVTQSDEGQR--QKLSVVL---RAVNR 525
           S+ +V+TC+  +  R  WR  P    D+    P+ T   EG+   ++  VV+   R VNR
Sbjct: 551 SRQAVRTCVLSRRWRDLWRSIPRVHADIYDFTPDGTIDGEGEEDVEEAEVVVVFNRFVNR 610

Query: 526 VL 531
           +L
Sbjct: 611 LL 612


>08_01_0601 - 5268520-5271112,5272448-5272950
          Length = 1031

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 198 DSPGSPTAPE-IPPEEYSLNENEERAIIE--PRSLEDPRVKEL 317
           D+P  PT+PE +PPE+ SL++    A  E  P S E    K++
Sbjct: 426 DTPPPPTSPEQMPPEKDSLDDIAPAAASETAPTSTEQTTKKKM 468


>09_02_0331 - 7324332-7325924,7327220-7327402
          Length = 591

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
 Frame = +3

Query: 48  SSPRPNSPRTPVLP---KKDDKEESFWDXXXXXXXXXXXXEVQDVQAEGKFAIDSPGSPT 218
           SS  P+ P  P  P   +K+ +E                  V DV+     +  S GSP 
Sbjct: 36  SSRHPSYPLCPPHPQRQRKEKRERGEVQLTTVIGNGGTKAIVIDVEPGDDSSPTSNGSPA 95

Query: 219 APEIPPEEYSLNE 257
           APE   + YS  E
Sbjct: 96  APEAEGQRYSSQE 108


>01_03_0179 + 13500413-13500768,13502522-13502642,13502876-13502998,
            13504409-13504497,13504612-13504696,13504852-13505011,
            13505096-13505160,13505296-13505349,13505437-13505527,
            13505685-13505986,13506084-13506365,13506451-13506764,
            13506920-13507080,13507202-13507305,13507379-13507535,
            13507652-13507896,13507995-13508327,13508428-13508751,
            13508816-13508899,13509001-13509169,13509610-13509731,
            13510538-13510792,13511115-13511252
          Length = 1377

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -3

Query: 437  GQNLQELLEYLSVIQVFTDVFDDYSVRGQL--IVDPIDQYLY*FFYSRVFKRSRFY 276
            GQN  +L+EY   I+  + + D Y+    +  +     + +    +S ++KRS  Y
Sbjct: 1139 GQNSSKLIEYFEGIEGISKIKDGYNPATWMLEVTSTTQEEMLGIDFSEIYKRSELY 1194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,603,444
Number of Sequences: 37544
Number of extensions: 291743
Number of successful extensions: 1028
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)