Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_P05
(528 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 29 0.57
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi... 28 0.99
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 28 0.99
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 27 1.7
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 27 1.7
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 26 3.0
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 25 7.0
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 7.0
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch... 25 7.0
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 25 9.2
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 28.7 bits (61), Expect = 0.57
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 230 RVECSVSNPTAARARREHSRPSRHSFITTCDDLRGS 337
R EC A+ E RPSR F C D G+
Sbjct: 936 RTECKAGEKEYKEAKSERRRPSRLIFYDNCGDSSGA 971
>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
Spa1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 226
Score = 27.9 bits (59), Expect = 0.99
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 205 SIYTCSPRPSGVLREQ 252
S TC P+PSG+L+EQ
Sbjct: 94 SFRTCLPKPSGILKEQ 109
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 27.9 bits (59), Expect = 0.99
Identities = 8/15 (53%), Positives = 14/15 (93%)
Frame = +3
Query: 36 VERWTKRSFHILLLD 80
+E+W K+SFH++L+D
Sbjct: 398 LEKWKKKSFHLILMD 412
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 27.1 bits (57), Expect = 1.7
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -3
Query: 268 SGSRWVAHGAL---HSAAGYRCRSKVRREIELAYVNIGTFTSKRVHQNGALTLRCAGNQS 98
+GSR +HG+L H+ GY RS +R L+ V + T ++ N L GN++
Sbjct: 685 NGSRNPSHGSLNTAHAGMGYGPRSMMRDPQNLSNVPPVSNTLDQLSGNADFELPVRGNRN 744
Query: 97 GEIPTPSNR 71
NR
Sbjct: 745 NRRGPGGNR 753
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 1.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -1
Query: 66 CGTIFWSISRHGCVIRDAAASC 1
C I W +S+ GCV ++ C
Sbjct: 414 CREIIWGLSKRGCVCKNCGFKC 435
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 3 TRRPRRVSHTRVERWTKRSFHILLLD-GVG-ISPDWF 107
+RRP + S T RW +F ILL+ GV S WF
Sbjct: 178 SRRPWKESITTAVRWVWHAFRILLITRGVPYFSTAWF 214
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 199 RREIELAYVNIGTFTSKRVHQNGAL 125
+R +E YVNIG F + V +G++
Sbjct: 153 KRSLESPYVNIGAFRTYPVGNDGSI 177
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 256 WVAHGALHSAAGYRCRSKVRREIELAYVNI 167
W+ AL S+AG CR+ + + Y N+
Sbjct: 294 WIIPMALGSSAGLACRALLLNPASVTYPNV 323
>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
Yml6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 203 SSSRDRACICKYRHIYKQKGSPERRTNAALCGEPVR 96
SS R C R +Y+QKG+ R A P+R
Sbjct: 55 SSKRRNEITCSGRKLYRQKGTGHARVGDA--SSPIR 88
>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 115 CAGNQSGEIPTPSNRRMWNDLL 50
CA SG +PTP N+ ++ L
Sbjct: 32 CAVKNSGNVPTPRNKSFFSRAL 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,061
Number of Sequences: 5004
Number of extensions: 36874
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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