Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_P05
(528 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1041 - 23876849-23876959,23877853-23878046,23878621-238786... 30 1.0
06_03_0351 - 19801191-19801691,19801724-19801792,19802216-19802431 29 1.7
02_02_0363 + 9446055-9446524,9446658-9446771,9446856-9447281,944... 29 3.1
07_03_1139 + 24254662-24255306 28 4.0
10_08_0913 + 21527267-21527377,21528290-21528742 28 5.3
06_03_0177 - 17579474-17580109,17580549-17580626,17581160-175813... 27 7.1
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156... 27 7.1
02_05_0288 - 27549718-27549940,27550025-27550102,27550282-275506... 27 7.1
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 27 9.3
03_02_0314 + 7398247-7400877 27 9.3
>08_02_1041 -
23876849-23876959,23877853-23878046,23878621-23878691,
23878956-23879009,23879051-23879187
Length = 188
Score = 30.3 bits (65), Expect = 1.0
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = -3
Query: 316 RRDEGVPRGAAVLAP-RSGSRWVAHGALHSAAGYRCRSKVRREIELAYVNIGTFTSKRVH 140
RR E G A L+ SG+RWV G LH+ + R++ E E A N+ T ++ V
Sbjct: 46 RRGEKPAEGGADLSDIDSGARWVIGGVLHTVVPFYERARY-VEDETAR-NVET-AAEVVE 102
Query: 139 QNGALTLRCAGNQSGEIP 86
Q +T + A N + +P
Sbjct: 103 QIAEVTEKLASNVADHLP 120
>06_03_0351 - 19801191-19801691,19801724-19801792,19802216-19802431
Length = 261
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 217 CSPRPSGVLREQPNGCQSEARAQP 288
CSP SGV +++P G +S ++ QP
Sbjct: 142 CSPGTSGVSKKRPKGVKSPSKRQP 165
>02_02_0363 +
9446055-9446524,9446658-9446771,9446856-9447281,
9447812-9447893,9447964-9448020,9448633-9448881,
9448978-9449109,9449163-9449291
Length = 552
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 164 ADIYICKLDLATNFRSTPVARGRVECSVSNPTAARARREHSRPSRHSFITT 316
AD++ + + +P RG CS S AR + E SR ++FI T
Sbjct: 175 ADVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRSDPNTFILT 225
>07_03_1139 + 24254662-24255306
Length = 214
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 355 PTHNSPRPT*VIARRDEGVPRGAAVLAPRSGSRWVAHGALHSAAGY 218
P+ + RP RR G R A+ PR+G+R A ALH A +
Sbjct: 74 PSESPRRPPKADWRR-YGATRTPAIRRPRTGARIAAPAALHGRASH 118
>10_08_0913 + 21527267-21527377,21528290-21528742
Length = 187
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 118 AALVRRSGEPFCL*MCRYLHMQARSRDELSIYTCSPRP 231
AAL RS P CL + R+L +A+ D +YTC+ P
Sbjct: 124 AALKSRSDIPACLAVGRFLAERAKEAD---VYTCTYTP 158
>06_03_0177 -
17579474-17580109,17580549-17580626,17581160-17581309,
17581415-17581538,17583227-17583315,17583431-17583507,
17584413-17584822,17586203-17586216
Length = 525
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +2
Query: 23 ITHPCREMDQKIVPHSSIGRCRNLTGLVPRTTQR*CAVLVNPFACKCADIYICKLDLATN 202
IT P M + HS++G TG++ TQ V+ C +DI+I D +N
Sbjct: 345 ITKPFEAMFPHLENHSTVGPG---TGMLEENTQGLAWSAVDYMVCLLSDIFIPTYDGPSN 401
Query: 203 F 205
F
Sbjct: 402 F 402
>03_03_0266 -
16014740-16015045,16015566-16015601,16015623-16015643,
16016331-16016591,16017504-16018985,16019834-16019989,
16020154-16020277,16020399-16020615,16020877-16021774,
16022947-16023291,16023371-16023565,16023751-16024453,
16024866-16025467
Length = 1781
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/67 (22%), Positives = 30/67 (44%)
Frame = -3
Query: 301 VPRGAAVLAPRSGSRWVAHGALHSAAGYRCRSKVRREIELAYVNIGTFTSKRVHQNGALT 122
V R +++ P+S V H L + + S V + E + V+ G +T++ + +
Sbjct: 151 VARASSISPPKSSQDKVCHDMLDTHVPEKSMSAVSNKDETSSVHFGYYTNRSDDEEEECS 210
Query: 121 LRCAGNQ 101
C+ Q
Sbjct: 211 AYCSDRQ 217
>02_05_0288 -
27549718-27549940,27550025-27550102,27550282-27550674,
27550752-27551347,27552232-27552978
Length = 678
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 248 SNPTAARARREHSRPSRHSFITTCDDLRGSRRIMR 352
S+ +A RR + P+R+S T C+D++ S R R
Sbjct: 108 SSGDSAATRRYQACPARYSEYTPCEDVKRSLRYPR 142
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 27.1 bits (57), Expect = 9.3
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = -3
Query: 319 ARRDEGVPRGAAVLAPRSGSRWVAHGALHSAAGYRCRSK 203
ARR GV R AAV G+R G H+AAG R K
Sbjct: 175 ARRANGVERVAAV---NGGARNGNGGGAHAAAGAEARKK 210
>03_02_0314 + 7398247-7400877
Length = 876
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 14 ASRITHPCREMDQKIVPHSSIGRCRNLTG 100
+S ++H CRE+ + VP SI N G
Sbjct: 713 SSSVSHRCREVIEAFVPEISIANTDNCNG 741
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,558,049
Number of Sequences: 37544
Number of extensions: 310981
Number of successful extensions: 1048
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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