Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P05
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g...    32   0.29 
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    32   0.29 
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    29   2.1  

>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of
           glp-1 protein.
          Length = 1492

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +2

Query: 2   HEAAASRITHPCREMDQKIVPHSSIGRCRN 91
           H A    +T PCREM  KIVP    G  RN
Sbjct: 540 HSANLQLLTLPCREMWMKIVPPEQQGEMRN 569


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
           protein Y53H1C.2a protein.
          Length = 1512

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +2

Query: 2   HEAAASRITHPCREMDQKIVPHSSIGRCRN 91
           H A    +T PCREM  KIVP    G  RN
Sbjct: 560 HSANLQLLTLPCREMWMKIVPPEQQGEMRN 589


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 148 RVHQNGALTLRCAGNQSG-EIPTPSNRRMWNDLLVHLSTRVC 26
           R+ +NG L  + A +    +I TPS   M N+L VH+  ++C
Sbjct: 82  RLEENGKLLSKFAVSPPDIKIFTPSTHEMLNELTVHILPKLC 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,443,867
Number of Sequences: 27780
Number of extensions: 235752
Number of successful extensions: 566
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)