Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_P04
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 111 9e-26
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 27 1.9
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 27 1.9
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 27 2.5
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 4.3
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 26 4.3
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 5.7
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 25 5.7
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||... 25 7.5
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 25 10.0
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 111 bits (266), Expect = 9e-26
Identities = 47/84 (55%), Positives = 65/84 (77%)
Frame = +1
Query: 304 ISKPAPEWEATAVLNGEFTQLSLSSFKGKYLVFFFYPLDFTFVCPTEILAFSERIEEFRK 483
I KPAP+++ TAV+NG F ++ L+ +KGK++ FYPLDFTFVCPTEI+AFSE +F +
Sbjct: 5 IGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFAE 64
Query: 484 INTEVVACSVDSHFTHLAWINTPR 555
N +V+ S DS ++HLA+INTPR
Sbjct: 65 RNAQVILTSTDSEYSHLAFINTPR 88
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 178 LGCTNCKSSLFESDSCYSFGSGNVF 252
+GC NC S+ FESD+ SGN +
Sbjct: 9 MGCPNCGSTTFESDT----ASGNTY 29
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 260 PPGKTFPLPKE*QESLSNNDDLQFVQPN 177
P G+T PKE ESL+ D LQ+++ N
Sbjct: 171 PLGRTILGPKENIESLTREDLLQYIKDN 198
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = -1
Query: 452 AKISVGQTNVKSKG*KKNTKYFPLKLDSDNCVNSPFSTAVASHSGAGFDIMALVNCS 282
AK NVK+ N+K++ D + N P S H GAG++ + + C+
Sbjct: 44 AKCKTEFQNVKAICRTYNSKFYMGIFDKEIIDNLPPSVKFICHLGAGYETVDVAACT 100
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 160 VSIVLLLGCTNCKSSLFES 216
VSI L+L CT C S++ E+
Sbjct: 432 VSIQLMLSCTTCVSNMMEA 450
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +1
Query: 244 NVFPGGARKIDHKLQFTKAMISKPAPEWEATAVLNGEFTQLSLSSFKGKYLVF 402
+ F ID+ ++TKA + KP E + + S +FKG +F
Sbjct: 18 HAFASSVLAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIF 70
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 254 LVEQEKLITNYNSLKP*YRSRRPNGKQLQY 343
++E++K I Y + +P YR NGK+++Y
Sbjct: 176 ILEEKKKIPLYPNGQPKYRKILENGKKVKY 205
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 313 PAPEWEATAVLNGEFTQLSLSSFKGKYLVFFFYPLDFTFVCPTE 444
P P +E + +G+F S + K K + YP TF TE
Sbjct: 271 PEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314
>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 465
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 412 PLDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLAW 540
PL F E+L F + + + C +D HF HL++
Sbjct: 253 PLGKYFTTEDEVLNFRRKTYHALVVFLFLPVCCLDPHFLHLSF 295
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 24.6 bits (51), Expect = 10.0
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 436 PTEILA-FSERIEEFRKINTEVVACSVDS 519
PT I+ + I E K T+V++CSVDS
Sbjct: 119 PTTIITGYRLAIREAVKFMTDVLSCSVDS 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,547
Number of Sequences: 5004
Number of extensions: 41214
Number of successful extensions: 95
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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