Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_P04
(557 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 93 1e-19
06_01_0671 - 4899611-4899829,4900870-4901448 50 2e-06
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 44 1e-04
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 42 3e-04
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 40 0.001
01_01_0942 + 7428384-7429536,7429623-7430335 29 1.9
05_03_0652 + 16606987-16607443,16607542-16607652,16609317-16609411 28 5.8
11_06_0594 + 25349612-25352530 27 7.7
02_05_0360 + 28276904-28277467 27 7.7
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 93.5 bits (222), Expect = 1e-19
Identities = 40/74 (54%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Frame = +1
Query: 301 MISKPAPEWEATAVLNGEFTQLSLSSFKGK-YLVFFFYPLDFTFVCPTEILAFSERIEEF 477
++ AP+++A AV + EF + LS + GK Y++ FFYPLDFTFVCPTEI AFS+R +EF
Sbjct: 69 LVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEF 128
Query: 478 RKINTEVVACSVDS 519
K+NTE++ S+DS
Sbjct: 129 EKLNTEILGVSIDS 142
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +1
Query: 364 LSLSSFKGKYLVFFFYPLDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTH 531
+SLS FKG+ +V +FYP D T C + AF + E+F+K EV+ S D +H
Sbjct: 137 VSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASH 192
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +1
Query: 427 FVCPTEILAFSERIEEFRKINTEVVACSVDS 519
FV EI AFS+R EEF KINTEV+ S+DS
Sbjct: 48 FVSSAEITAFSDRYEEFEKINTEVLGVSIDS 78
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 343 LNGEFTQLSLSSFKGK-YLVFFFYPLDFTFVCPTEILAFSERIEEFRKINTEVVACSVDS 519
L+ ++ + F G Y++ F +P DFT VC TE+ A + +EF K +++ S D
Sbjct: 50 LDSTHGKIRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDD 109
Query: 520 HFTHLAWI 543
+H WI
Sbjct: 110 VQSHKDWI 117
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 361 QLSLSSFKGK-YLVFFFYPLDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLA 537
++ L F G Y++ F +P DFT VC TE+ + EF K +++ S D +H
Sbjct: 21 KIRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKD 80
Query: 538 WI 543
WI
Sbjct: 81 WI 82
>01_01_0942 + 7428384-7429536,7429623-7430335
Length = 621
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -1
Query: 509 EHATTSVFIFLNSSILSENAKISVGQTNVKSKG-*KKNTKYFPLKLDSDNCVNSPFSTAV 333
EH+ V I++ + + +EN KI +TN+ G T + DN + F TA
Sbjct: 326 EHSRRRVVIYVKAGVYTENVKIGSKKTNLMLVGDGAGKTVVVGYRSVHDN--YTTFHTAT 383
Query: 332 ASHSGAGF 309
+ +GAGF
Sbjct: 384 LAVAGAGF 391
>05_03_0652 + 16606987-16607443,16607542-16607652,16609317-16609411
Length = 220
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 274 DHKLQFTKAMISKPAPEWEATAVLNGEFTQLSLSSF--KGK-YLVFFFYP 414
DH ++FT A I +P + T + N T +++ +GK YLV YP
Sbjct: 114 DHDMRFTYASIGQPGSMHDTTVLFNALETDIAIFPHPPQGKYYLVDVGYP 163
>11_06_0594 + 25349612-25352530
Length = 972
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
Frame = +1
Query: 172 LLLGCTNC---KSSLFESDSC 225
LL GCTNC K++L E +SC
Sbjct: 693 LLAGCTNCPSKKNNLMEKESC 713
>02_05_0360 + 28276904-28277467
Length = 187
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = +1
Query: 148 KYIVVSIVLLLGCTNCKSSLFESDSCYSFGSGNVF 252
+ +V ++L+LG + C+SS+ + D+C S +G+ +
Sbjct: 3 RLLVPVLLLMLGLSTCESSVLQ-DTCKSVAAGHKY 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,063,211
Number of Sequences: 37544
Number of extensions: 242881
Number of successful extensions: 506
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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