Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_P01
(509 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 76 3e-15
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 71 8e-14
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 67 1e-12
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 29 0.40
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 28 0.93
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 25 5.0
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 6.6
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 25 6.6
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 25 6.6
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 25 8.7
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 76.2 bits (179), Expect = 3e-15
Identities = 33/54 (61%), Positives = 48/54 (88%)
Frame = +2
Query: 110 LGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 271
+GGK SP+A+D+E +LS+VGIEA++E+++ +ISELNGKN+EELI AG KLS++
Sbjct: 12 VGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTV 65
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 71.3 bits (167), Expect = 8e-14
Identities = 30/54 (55%), Positives = 48/54 (88%)
Frame = +2
Query: 110 LGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 271
+GGK SP+A+D+E +LS+VGIEA+SE+++ +I+ELNGK+++ELI AG KL+++
Sbjct: 12 VGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATV 65
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 67.3 bits (157), Expect = 1e-12
Identities = 28/54 (51%), Positives = 47/54 (87%)
Frame = +2
Query: 110 LGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 271
+GGK SP+A+D+E +LS+VGIE++SE+++ +I EL+GK+++ELI AG KL+++
Sbjct: 12 VGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATV 65
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 29.1 bits (62), Expect = 0.40
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 146 EKILSSVGIEADSEKLKKVISELNGKNVEELI 241
E +L S G+E S+ KV S +N K+VEE I
Sbjct: 297 ELVLLSEGVEMYSDDWAKVASHVNTKSVEECI 328
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 27.9 bits (59), Expect = 0.93
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 143 VEKILSSVGIEADSEKLKKVISELNG 220
V++I VG+E DSE K + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 104 PVLGGKASPAAADVE 148
PV GG A+PAAAD E
Sbjct: 70 PVAGGAAAPAAADGE 84
>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 526
Score = 25.0 bits (52), Expect = 6.6
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 125 SPAAADVEKILS--SVGIEADSEKLKKVISELNGKNVEELIEAGRGKLS 265
SP++ + ++ + G DSEK+K + + K+ ++ E GK S
Sbjct: 444 SPSSKPISTLIQEKNFGTIGDSEKIKACVESVLSKHSKQFEELKNGKTS 492
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 25.0 bits (52), Expect = 6.6
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -2
Query: 73 FFKSLRHETCIAENKMFVLHETLV 2
FF +L + C +E+++ LH T++
Sbjct: 772 FFSALNYSECFSESQISPLHATVI 795
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 25.0 bits (52), Expect = 6.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 140 DVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSS 268
DV++ LS + EA + NG+ +EE++ A KL +
Sbjct: 56 DVDQ-LSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEA 97
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 141 SAAAGDALPPNTGXXGNTRHVT 76
SAA G A P TG GNT + T
Sbjct: 23 SAAQGAATPAATGLFGNTNNNT 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,598,220
Number of Sequences: 5004
Number of extensions: 23264
Number of successful extensions: 67
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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