Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P01
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     65   4e-11
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129           54   7e-08
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    51   5e-07
07_01_1001 - 8460467-8460799                                           45   3e-05
07_03_0321 + 16757414-16757743                                         44   5e-05
01_06_0098 - 26416768-26416998                                         31   0.41 
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    28   3.8  
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903     27   8.8  
08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166...    27   8.8  

>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 29/55 (52%), Positives = 43/55 (78%)
 Frame = +2

Query: 107 VLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 271
           VLGG  SP+A D++ IL SVG+EA+ E+L+ ++SEL GK++ E+I AGR K +S+
Sbjct: 11  VLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASV 65


>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
          Length = 114

 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 24/54 (44%), Positives = 38/54 (70%)
 Frame = +2

Query: 110 LGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 271
           L G +SP A D+  IL SVG E D+ K++ ++S+++GK++ ELI  GR K +S+
Sbjct: 12  LAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASV 65


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 23/54 (42%), Positives = 37/54 (68%)
 Frame = +2

Query: 110 LGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 271
           L G  +P+A D+  IL SVG E D  K++ ++S+L GK++ E+I +GR K +S+
Sbjct: 205 LAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASV 258


>07_01_1001 - 8460467-8460799
          Length = 110

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = +2

Query: 110 LGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLS 265
           +GG ASP   DV  IL +VG + D +KL  +  ++ GK++ E++ AG   L+
Sbjct: 12  IGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSEMLA 63


>07_03_0321 + 16757414-16757743
          Length = 109

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = +2

Query: 110 LGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLS 265
           +GG ASP   DV  IL +VG + D +KL  +  ++ GK++ E++ AG   L+
Sbjct: 12  IGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSEMLA 63


>01_06_0098 - 26416768-26416998
          Length = 76

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 128 PAAADVEKILSSVGIEADSEKLKKVISELNGKN 226
           P    V KI+ +V IEADS + K ++  L GK+
Sbjct: 16  PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 113 GGKA-SPAAADVEKILSSVGIEADSEKLKKVISELNGKNVE 232
           GG+  SPA  D+   L+  G E DS   + ++S+LNG   E
Sbjct: 45  GGQGDSPATQDLLSKLNGSGGEGDSPATQDLLSKLNGSGGE 85


>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
          Length = 1135

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 89  VLPXXPVLGGKASPAAADVEKILSS-VGIEADSEKLKKVISELNGK 223
           V+   P+ GG++S  +    +I  + VGIE   E+L  ++ E+ G+
Sbjct: 140 VIKNNPLAGGQSSSPSPQDRRIADNPVGIEEPVEELLSLLDEVEGE 185


>08_02_0909 -
           22515326-22515418,22515992-22516150,22516583-22516658,
           22517980-22518141,22518826-22519259,22519723-22521414
          Length = 871

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +2

Query: 149 KILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSS 268
           ++LS  GI++ S K    +  ++G N++EL  AG  +L+S
Sbjct: 674 EVLSMSGIQSVSNKFVNELIPVHGSNLKELAFAGCLQLTS 713


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,059,933
Number of Sequences: 37544
Number of extensions: 178860
Number of successful extensions: 493
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)