Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O23
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...   106   2e-24
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    27   1.3  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.3  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   1.7  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    27   1.7  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    26   3.8  
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl...    26   3.8  
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.1  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   5.1  
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    25   5.1  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    25   6.7  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   6.7  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   8.9  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.9  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   8.9  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    25   8.9  

>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score =  106 bits (254), Expect = 2e-24
 Identities = 53/135 (39%), Positives = 76/135 (56%), Gaps = 2/135 (1%)
 Frame = +1

Query: 118 VEKHLELEFDIGTLLAXXXXXXXXXXXXXXXXE-YLLSLTRDNTQLLLNKIWELPTERIE 294
           +E  + L+FD+G + A                E +L SL+RDN Q L+NK+  LP ER  
Sbjct: 5   IENSIPLDFDLGNMAAFDISPLDETKLSGSEKESFLFSLSRDNVQQLVNKMISLPKERTS 64

Query: 295 EAIVVRLPAPTTVLPRAKPVPKPKPLTKWQQFAXXXXXXXXXXD-QLKWDEQLQKWVPLF 471
           + ++++LP   T LPRAKP+PKPKP TKWQ+FA          + +L +DE   +WVP +
Sbjct: 65  DGVLLQLPETVTPLPRAKPLPKPKPETKWQRFARIKGIAPKKREGRLVFDEASGEWVPKW 124

Query: 472 GFKKSAAEKEKNWLI 516
           G+K    E E  WL+
Sbjct: 125 GYKGKNKELETQWLV 139


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 242 LSLVKDNKYSSLSEFNNLLSRSFISEASNVPISNSSSKCF 123
           +S V D    S+S  NN+ SRS IS A++   S  +S  F
Sbjct: 641 ISTVSDTAVPSMSFANNISSRSVISAATDSKPSTRTSPPF 680


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 362 GFGTGLARGSTVVGAGRRTTIASSILSVGNSHILFSNNCVLSL 234
           G G G+A  +T+V     +  A    ++  S++  SN CVL +
Sbjct: 453 GLGNGIAVTTTLVAIIHASPSAFQASAIATSYLFRSNGCVLGV 495


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = -2

Query: 272 SHILFSNNCVLSLVKDNKYSSLSEFNNLLSRSFISEASNVPISNS 138
           S+++   NC+L+ ++ + Y +L  F N+L +S +   + V +S S
Sbjct: 633 SYLMRLLNCILAQLQPSLYPNLEIFENVL-KSCLQSVAGVALSQS 676


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +1

Query: 49  KMDIVNEILEKEQKKAEKYKPIIVEK 126
           ++DI+N ++EKE+ +  KY+ ++  K
Sbjct: 477 EIDILNNLIEKEEGELTKYQTLVKSK 502


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 67  EILEKEQKKAEKYKPIIVEKHLELE 141
           E++EKE+K+ E+ + I  +KH E E
Sbjct: 140 ELMEKEKKEKERIRLIEEQKHKENE 164


>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 275 NSHILFSNNCVLSLVKDNKYSSLSEFNNLLSRSFISEASN 156
           ++ +L  NN +L    +N  SSLS F ++ ++  + E +N
Sbjct: 251 DAQVLQKNNDILKTYVENAKSSLSVFPDIEAKQALMEIAN 290


>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 283 ERIEEAIVVRLPAPTTVLPRAKPVPKPK 366
           ER++E IV+    P   LP A P+P  K
Sbjct: 72  ERLKEWIVLAKVRPEIPLPPAAPIPMKK 99


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -2

Query: 284 SVGNSHILFSNNCVLSLVKDNKYSSLSEFNNLLSRSFISEASNVPISNSSS 132
           S  +SH   S++   S       SS S    + S +FIS  +  P S+SSS
Sbjct: 213 STSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSS 263


>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 22/64 (34%), Positives = 32/64 (50%)
 Frame = -2

Query: 335 STVVGAGRRTTIASSILSVGNSHILFSNNCVLSLVKDNKYSSLSEFNNLLSRSFISEASN 156
           ST    GR+  +    L+V N   +  NN  L+  K+NK +S S+FN+ L R      + 
Sbjct: 19  STTANPGRQQLLR---LAVSNQRQV--NNVSLANGKENKRTSNSKFNSSL-RKIEEPIAG 72

Query: 155 VPIS 144
           VP S
Sbjct: 73  VPSS 76


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 384 LPLSQWFRFWHWLG 343
           +P SQW R WH+ G
Sbjct: 179 VPSSQWSRLWHYGG 192


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 368 GLGFGTGLARGSTVVGAGRRTTIASSILSVGNSHILFS 255
           G G GTG +  S+ V    R T  +S LS  N+HI+ S
Sbjct: 195 GTGAGTGASHRSSPVT--NRQTNNTSALSNSNAHIMSS 230


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 326 VGAGRRTTIASSILSVGNSHILFSNNCVLSLVK 228
           VG  R   + SS      S++LF NN V S  K
Sbjct: 559 VGVDRNLLLVSSGSGEFKSYVLFKNNLVFSETK 591


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = -2

Query: 320 AGRRTTIASSILSVGNSHILFSNNCVLSLVKDNKYSSLSE--FNNLLSRSFISEASNVPI 147
           A   T+++SS +   +S  + S++   ++   +  S LS   F +  S SFI+  S V  
Sbjct: 29  AAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFIT--SLVSS 86

Query: 146 SNSSSKCFSTIIGLYFSAFFCSFSNISLTIS 54
           S+  S   S  +    SA   S S+ S T S
Sbjct: 87  SSQQSSSSSASLTSSSSATLTSSSSASPTSS 117


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 296 SSILSVGNSHILFSNNCVLSLVKDNKYSS--LSEFNN 192
           +S+LS+GN+H   SN     ++K N Y +  LS  NN
Sbjct: 483 NSVLSIGNNHSNHSN-----IIKPNTYKNTILSNENN 514


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 46  LKMDIVNEILEKEQKKAEK 102
           +KM+IV+ + +K+QKK  K
Sbjct: 75  IKMEIVSSLQQKDQKKRNK 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,304
Number of Sequences: 5004
Number of extensions: 36516
Number of successful extensions: 135
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)