Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_O23
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1646 - 35027475-35027600,35027713-35027826,35027920-350281... 72 3e-13
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264... 32 0.31
04_01_0260 - 3506672-3508981 31 0.73
06_03_0854 + 25400855-25403741,25406174-25407708 30 1.3
09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438 29 2.2
01_06_0295 + 28276505-28276576,28276682-28276888,28277492-282777... 29 2.9
08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476... 28 3.9
03_05_0013 - 19718178-19718930,19718997-19719205,19719245-197193... 28 5.1
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 27 8.9
03_02_0308 - 7297228-7298008,7298495-7298576,7298612-7298669,729... 27 8.9
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 27 8.9
>04_04_1646 -
35027475-35027600,35027713-35027826,35027920-35028106,
35028262-35028379,35028699-35028827,35028947-35028998,
35029525-35029869
Length = 356
Score = 71.7 bits (168), Expect = 3e-13
Identities = 31/85 (36%), Positives = 48/85 (56%)
Frame = +1
Query: 247 QLLLNKIWELPTERIEEAIVVRLPAPTTVLPRAKPVPKPKPLTKWQQFAXXXXXXXXXXD 426
Q + + ++ LP + +VRLP PTT PR K +P+PKP TKW+QFA +
Sbjct: 81 QAVADALFALPATEDRDGPMVRLPPPTTRFPREKHLPRPKPPTKWEQFAKMKGITKHKKN 140
Query: 427 QLKWDEQLQKWVPLFGFKKSAAEKE 501
+ +WDEQ Q W +G+ + +K+
Sbjct: 141 KREWDEQTQTWKRTYGYDRVNDDKD 165
>05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,
2643625-2643730,2643770-2644349,2645780-2645871,
2645969-2646035,2646126-2646231,2646628-2646708,
2646789-2647058,2647158-2648788,2648834-2649385,
2650602-2651324,2651451-2651526
Length = 1486
Score = 31.9 bits (69), Expect = 0.31
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -2
Query: 317 GRRTTIASSIL--SVGNSHILFSNNCVLSLVKDNKYSSLSEFNNLLSRSFISEASNVPIS 144
GR T++ S+I+ S SHIL S SL D+K S S N S + +AS P S
Sbjct: 851 GRSTSLLSTIIKKSSAASHILNS-----SLSADSKTSGFSSSGNKHKGSHVEDASKSPRS 905
Query: 143 NS 138
NS
Sbjct: 906 NS 907
>04_01_0260 - 3506672-3508981
Length = 769
Score = 30.7 bits (66), Expect = 0.73
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Frame = +1
Query: 223 LSLTRDNTQLLLNKIWELPTERIEEAIVVRLPAPTTVLPRAK-------PVPKPKPLTKW 381
+ ++RD L +++W+ E I V P P P A P P PKP+T +
Sbjct: 431 IQISRDFRNKLFDRVWKNMELAFPERIPVEYPLPPHPYPMAPMEFDLSLPAPPPKPITGF 490
Query: 382 QQ 387
Q
Sbjct: 491 DQ 492
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 277 PTERIEEAIVVRLPAPTTVLPRAKPVPKPKPL 372
P + EAI+V +P P A PVPK + L
Sbjct: 1290 PPTAVPEAILVPMPPPAVAAAAAAPVPKKRKL 1321
>09_03_0088 - 12242020-12242941,12243467-12243550,12243591-12244438
Length = 617
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 407 IPLVFANCCHLVNGLGFGTGLARGSTVVGAG-RRTTIASS 291
IP A CCH+ G GFG G+ GST AG R I S+
Sbjct: 245 IPPRVAGCCHV--GAGFG-GVVAGSTAALAGVHRRCIGST 281
>01_06_0295 +
28276505-28276576,28276682-28276888,28277492-28277740,
28277928-28278080,28278158-28278313,28278411-28278570,
28278664-28278815,28278906-28278993,28279111-28279223,
28279271-28279345,28279435-28279669,28279760-28280148
Length = 682
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 58 IVNEILEKEQKKAEKYKPIIVEKHLELE 141
+ +E+L EQ KA K K ++++K ELE
Sbjct: 280 VESEVLRLEQLKASKMKDLVLKKKAELE 307
>08_02_0733 +
20546072-20546325,20546924-20547017,20547441-20547624,
20547722-20547831,20548328-20548423,20548525-20548679,
20548743-20548986,20549159-20549314,20549600-20549829,
20552213-20552316,20552420-20552505,20552776-20553066,
20553383-20553475,20553640-20553735,20553838-20553939,
20554196-20554266,20554784-20555035,20555786-20556529,
20557038-20557119,20557192-20557347,20557446-20557655,
20558282-20558665
Length = 1397
Score = 28.3 bits (60), Expect = 3.9
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -2
Query: 347 LARGSTVVGAGRRTTIASSILSVGNSHILFSNNCVLSLVKDNKYSSL-SEFNNLLS 183
LARG + A I +SILSV H+L N+ ++K N+ SL S F+N S
Sbjct: 683 LARGRVIDKACNDPLIQASILSVLPQHVL-RNSVDTPILKANELRSLVSWFHNTFS 737
>03_05_0013 -
19718178-19718930,19718997-19719205,19719245-19719325,
19719581-19720613
Length = 691
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 247 QLLLNKIWELPTERIEEAIVVRLPAPTTVLPRAKPVPKPKPLTKWQQ 387
Q L K +PT R + I+V+L L ++KP PKP W++
Sbjct: 628 QNFLEKETTMPTNRYWK-ILVKLSTLAKKLEQSKPSSTPKPKKVWKE 673
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 313 LPAPTTVLPRAKPVPKPKPLTKWQQ 387
LP PT +LP+ + P P P T+ Q
Sbjct: 97 LPPPTPLLPKHQQAPPPPPPTQSHQ 121
>03_02_0308 -
7297228-7298008,7298495-7298576,7298612-7298669,
7298723-7298835,7298924-7299034,7299480-7299597,
7299706-7299809,7300570-7300665,7301806-7302307
Length = 654
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = +1
Query: 277 PTERIEEAIVVRLPAPTTVLPRAKPVPKPKPLTKW 381
P++ ++ V P +P PVP P T W
Sbjct: 491 PSDGMQPLFVAPAPVAAAAMPFPSPVPLPNSTTAW 525
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 220 LLSLTRDNTQLLLNKIWELPTERI 291
+L ++ D TQ+LLN I ELP +
Sbjct: 1871 ILKVSEDQTQMLLNVISELPNNEL 1894
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,500,582
Number of Sequences: 37544
Number of extensions: 214109
Number of successful extensions: 1120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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