Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O23
         (516 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D25218-1|BAA04948.1|  399|Homo sapiens KIAA0112 protein.              142   5e-34
BC013043-1|AAH13043.1|  365|Homo sapiens RRS1 ribosome biogenesi...   142   5e-34
BC001811-1|AAH01811.1|  365|Homo sapiens RRS1 ribosome biogenesi...   142   5e-34
X72215-1|CAA51017.1|  291|Homo sapiens transcription factor  pro...    29   7.3  
X62429-1|CAA44295.1|  291|Homo sapiens transcription factor prot...    29   7.3  
L18781-1|AAA60093.1|  291|Homo sapiens Pit-1/GHF-1 variant protein.    29   7.3  
D10216-1|BAA01068.1|  291|Homo sapiens Pit-1/GHF-1 protein.            29   7.3  

>D25218-1|BAA04948.1|  399|Homo sapiens KIAA0112 protein.
          Length = 399

 Score =  142 bits (345), Expect = 5e-34
 Identities = 75/154 (48%), Positives = 96/154 (62%), Gaps = 2/154 (1%)
 Frame = +1

Query: 61  VNEILEK-EQKKAEKYKPIIVEKHLELEFDIGTLLAXXXXXXXXXXXXXXXXEY-LLSLT 234
           V E+L K EQ +AEK + I V K LEL+FD+G LLA                E  L +L 
Sbjct: 40  VEELLAKAEQDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALA 99

Query: 235 RDNTQLLLNKIWELPTERIEEAIVVRLPAPTTVLPRAKPVPKPKPLTKWQQFAXXXXXXX 414
           RDNTQLL+N++W+LPTER+EEAIV RLP PTT LPR KP+P+P+PLT+WQQFA       
Sbjct: 100 RDNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRP 159

Query: 415 XXXDQLKWDEQLQKWVPLFGFKKSAAEKEKNWLI 516
                L WDE   +W   +G+++ A +  K WLI
Sbjct: 160 KKKTNLVWDEVSGQWRRRWGYQR-ARDDTKEWLI 192


>BC013043-1|AAH13043.1|  365|Homo sapiens RRS1 ribosome biogenesis
           regulator homolog (S. cerevisiae) protein.
          Length = 365

 Score =  142 bits (345), Expect = 5e-34
 Identities = 75/154 (48%), Positives = 96/154 (62%), Gaps = 2/154 (1%)
 Frame = +1

Query: 61  VNEILEK-EQKKAEKYKPIIVEKHLELEFDIGTLLAXXXXXXXXXXXXXXXXEY-LLSLT 234
           V E+L K EQ +AEK + I V K LEL+FD+G LLA                E  L +L 
Sbjct: 6   VEELLAKAEQDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALA 65

Query: 235 RDNTQLLLNKIWELPTERIEEAIVVRLPAPTTVLPRAKPVPKPKPLTKWQQFAXXXXXXX 414
           RDNTQLL+N++W+LPTER+EEAIV RLP PTT LPR KP+P+P+PLT+WQQFA       
Sbjct: 66  RDNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRP 125

Query: 415 XXXDQLKWDEQLQKWVPLFGFKKSAAEKEKNWLI 516
                L WDE   +W   +G+++ A +  K WLI
Sbjct: 126 KKKTNLVWDEVSGQWRRRWGYQR-ARDDTKEWLI 158


>BC001811-1|AAH01811.1|  365|Homo sapiens RRS1 ribosome biogenesis
           regulator homolog (S. cerevisiae) protein.
          Length = 365

 Score =  142 bits (345), Expect = 5e-34
 Identities = 75/154 (48%), Positives = 96/154 (62%), Gaps = 2/154 (1%)
 Frame = +1

Query: 61  VNEILEK-EQKKAEKYKPIIVEKHLELEFDIGTLLAXXXXXXXXXXXXXXXXEY-LLSLT 234
           V E+L K EQ +AEK + I V K LEL+FD+G LLA                E  L +L 
Sbjct: 6   VEELLAKAEQDEAEKLQRITVHKELELQFDLGNLLASDRNPPTGLRCAGPTPEAELQALA 65

Query: 235 RDNTQLLLNKIWELPTERIEEAIVVRLPAPTTVLPRAKPVPKPKPLTKWQQFAXXXXXXX 414
           RDNTQLL+N++W+LPTER+EEAIV RLP PTT LPR KP+P+P+PLT+WQQFA       
Sbjct: 66  RDNTQLLINQLWQLPTERVEEAIVARLPEPTTRLPREKPLPRPRPLTRWQQFARLKGIRP 125

Query: 415 XXXDQLKWDEQLQKWVPLFGFKKSAAEKEKNWLI 516
                L WDE   +W   +G+++ A +  K WLI
Sbjct: 126 KKKTNLVWDEVSGQWRRRWGYQR-ARDDTKEWLI 158


>X72215-1|CAA51017.1|  291|Homo sapiens transcription factor
           protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 170 SEASNVPISNSSSKCFSTIIGLYFSAFFCSFSNISLTISI 51
           S A  +P+SN ++   ST  GL++S   C + N   T  +
Sbjct: 30  SAAECLPVSNHATNVMSTATGLHYSVPSCHYGNQPSTYGV 69


>X62429-1|CAA44295.1|  291|Homo sapiens transcription factor
           protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 170 SEASNVPISNSSSKCFSTIIGLYFSAFFCSFSNISLTISI 51
           S A  +P+SN ++   ST  GL++S   C + N   T  +
Sbjct: 30  SAAECLPVSNHATNVMSTATGLHYSVPSCHYGNQPSTYGV 69


>L18781-1|AAA60093.1|  291|Homo sapiens Pit-1/GHF-1 variant protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 170 SEASNVPISNSSSKCFSTIIGLYFSAFFCSFSNISLTISI 51
           S A  +P+SN ++   ST  GL++S   C + N   T  +
Sbjct: 30  SAAECLPVSNHATNVMSTATGLHYSVPSCHYGNQPSTYGV 69


>D10216-1|BAA01068.1|  291|Homo sapiens Pit-1/GHF-1 protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 170 SEASNVPISNSSSKCFSTIIGLYFSAFFCSFSNISLTISI 51
           S A  +P+SN ++   ST  GL++S   C + N   T  +
Sbjct: 30  SAAECLPVSNHATNVMSTATGLHYSVPSCHYGNQPSTYGV 69


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,809,589
Number of Sequences: 237096
Number of extensions: 1266557
Number of successful extensions: 7744
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7719
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)