Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O23
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   1.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   3.3  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   3.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   5.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.5  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 347 LARGSTVVGAGRRTTIASSILSVGNSHILFSNNCVLSL 234
           +A G    G GR +++ S  L+   S ++F+  C+L+L
Sbjct: 4   VALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTL 41


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 347 LARGSTVVGAGRRTTIASSILSVGNSHILFSNNCVLSL 234
           +A G    G GR +++ S  L+   S ++F+  C+L+L
Sbjct: 4   VALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTL 41


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 347 LARGSTVVGAGRRTTIASSILSVGNSHILFSNNCVLSL 234
           +A G    G GR +++ S  L+   S ++F+  C+L+L
Sbjct: 4   VALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTL 41


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 347 LARGSTVVGAGRRTTIASSILSVGNSHILFSNNCVLSL 234
           +A G    G GR +++ S  L+   S ++F+  C+L+L
Sbjct: 4   VALGRCAGGGGRLSSVLSLSLTSLASSLIFTILCILTL 41


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 67  EILEKEQKKAEKYKPIIVEKHLELEFDI 150
           +ILE    + E+Y P   E + ++ F+I
Sbjct: 216 DILEVPASRNEEYYPCCTEPYSDITFNI 243


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 128 CFSTIIGLYFSAFFCSFSNI 69
           CF   I L F AFF SF  I
Sbjct: 228 CFVIPIMLLFLAFFVSFRKI 247


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 260 FSNNCVLSLVKDNKYSSLSEFNNLLSRSFISEASNVPISNS 138
           F+ N     + +   +S ++ +   S+SFI   S   +SNS
Sbjct: 536 FAQNLYAMKMNETYINSGNKISLATSKSFIKANSQTEVSNS 576


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 405 TFSFCKLLPLSQWFRFW 355
           TF+   L+ +  WF FW
Sbjct: 206 TFAPSTLVVMLSWFSFW 222


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -2

Query: 245 VLSLVKDNKYSSLSEFNNLLSRSFISEASN 156
           + SL  + KYS+ + +NN  + ++ +  +N
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNNNYNNNYNN 111


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -2

Query: 245 VLSLVKDNKYSSLSEFNNLLSRSFISEASN 156
           + SL  + KYS+ + +NN  + ++ +  +N
Sbjct: 82  ISSLSNNYKYSNYNNYNNNYNNNYNNNYNN 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,574
Number of Sequences: 438
Number of extensions: 2976
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)