Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O22
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    31   0.17 
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   6.4  
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    25   6.4  

>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 86  NDSHHIRNSSIPATGKAMSRTDGHYVSNMQQNCCHQSGLRTEQSNTHHI 232
           NDS H+R+S+      + +  DGH+V ++  N    S   T +SNT  +
Sbjct: 72  NDSGHVRSSNDRIPSTSSNHADGHHVDSVFSNL---SAKPTVESNTEEL 117


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
 Frame = +1

Query: 49  RPVW*SLQTLHRERQSSHPEQQHPGHRESYVPDRRALRVKHATKLL---------SPEWI 201
           RP   SL+ +H ++      +QH G   + +PD  A  + + + LL          P++ 
Sbjct: 653 RPCIHSLRGIHGQQDGGL--EQHDGDHVNMLPDTHAEELAYTSMLLFHDIPTRDIRPDFN 710

Query: 202 TYRTIEHTSYP 234
            +  ++H +YP
Sbjct: 711 VHELVDHGTYP 721


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 77  FTANDSHHIRNSSIPATGKAMSRTDGHY 160
           FT  D  HIR ++ P      S TD HY
Sbjct: 392 FTGIDWDHIRETAAPFIPNLKSITDTHY 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,387
Number of Sequences: 5004
Number of extensions: 48384
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)