Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O22
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0003 - 13577369-13578082,13579045-13579092                       31   0.53 
06_01_0745 + 5570821-5571496,5572205-5572322,5572410-5572571,557...    29   2.1  
06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832...    29   3.7  
03_04_0155 - 17773121-17773576,17773744-17774322                       29   3.7  
05_01_0522 - 4506667-4507254,4507474-4507824,4507967-4508163,450...    28   6.5  
01_01_0462 + 3422352-3422439,3423057-3423241,3423333-3423530,342...    27   8.7  

>09_04_0003 - 13577369-13578082,13579045-13579092
          Length = 253

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 350 VRTEECLALRAVMIGSFARSHAVRKQATTAATRDNTKSGGYDVCSIVR 207
           ++TE C    A M+  FAR H +    TTAA  ++   G  D  S+ R
Sbjct: 205 MQTEACTYNTAPMVAVFARLHRLTTAITTAAAAEDPDGGSPDRRSVDR 252


>06_01_0745 +
           5570821-5571496,5572205-5572322,5572410-5572571,
           5572650-5572681,5573406-5573584,5573697-5573897
          Length = 455

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +3

Query: 213 NRTHIISAALCVISSCCCGCLFPYCMRSCKTA---NHYCPQCKAFLGSYT 353
           N T+ ++A  CV  SC  G L  YC  +  TA   +  CP     LG+ T
Sbjct: 244 NGTYALTAGNCVQCSCGPGDLKLYCTPASLTASCSSMQCPNSNLMLGNVT 293


>06_02_0066 -
           11081446-11081544,11081639-11081846,11083122-11083257,
           11083339-11083541,11083616-11083765,11083848-11083964,
           11084623-11085119
          Length = 469

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 264 CGCLFP-YCMRSCKTANHYCPQCKA 335
           CG LF  +C+RS     H CP C+A
Sbjct: 275 CGHLFHVHCLRSWLERQHTCPTCRA 299


>03_04_0155 - 17773121-17773576,17773744-17774322
          Length = 344

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 76  LHRERQSSHPEQQHPGHRESYVPDRRALRVKHATKLLSPEWITYRTIEHTSYPP 237
           L +++Q   P Q HP HR    P ++   V     LLS  ++ +  I H  + P
Sbjct: 206 LQKQKQVEKPNQTHPSHRGLKSPTKKTAFV----LLLSLLFLVHIAISHALFSP 255


>05_01_0522 -
           4506667-4507254,4507474-4507824,4507967-4508163,
           4508324-4508582,4508656-4508868,4508946-4509071,
           4509159-4509296,4509376-4509721,4509822-4510088,
           4510427-4510616,4510700-4510784,4510885-4511072,
           4511262-4511457,4512027-4512113
          Length = 1076

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
 Frame = +3

Query: 261 CCGCLFPYCMRSC-----KTANHYCPQCK 332
           C  C FP C R C     K  N  CPQCK
Sbjct: 60  CNECAFPVC-RPCYEYERKEGNQCCPQCK 87


>01_01_0462 +
           3422352-3422439,3423057-3423241,3423333-3423530,
           3423617-3423676,3424022-3424171
          Length = 226

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 288 MRSCKTANHYCPQCKAFLGSYTP 356
           +++C  A++Y  QCK  +  YTP
Sbjct: 165 LKACSKADNYVQQCKKMVLEYTP 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,338,220
Number of Sequences: 37544
Number of extensions: 296309
Number of successful extensions: 747
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)