Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O22
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical pr...    54   1e-07
U67956-1|AAB07690.2|  157|Caenorhabditis elegans Hypothetical pr...    43   2e-04
AL110500-20|CAI79282.1|  110|Caenorhabditis elegans Hypothetical...    40   0.001
AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical...    34   0.068
Z81464-6|CAB03856.2|  102|Caenorhabditis elegans Hypothetical pr...    29   2.6  

>Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical
           protein F36G3.3 protein.
          Length = 141

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 24/54 (44%), Positives = 30/54 (55%)
 Frame = +3

Query: 183 VVTRVDYVPNNRTHIISAALCVISSCCCGCLFPYCMRSCKTANHYCPQCKAFLG 344
           +VTR   V    T I  AAL +    CC C  P+C+RSCK   H CP C+A +G
Sbjct: 84  IVTRTKSVYGLLTWIFFAALFLFGCWCC-CFLPFCLRSCKDIIHTCPNCRAMIG 136


>U67956-1|AAB07690.2|  157|Caenorhabditis elegans Hypothetical
           protein F16F9.1 protein.
          Length = 157

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +3

Query: 279 PYCMRSCKTANHYCPQCKAFLG 344
           P+C+ SCK A+HYCP+C A LG
Sbjct: 130 PFCLDSCKDAHHYCPRCNALLG 151


>AL110500-20|CAI79282.1|  110|Caenorhabditis elegans Hypothetical
           protein Y87G2A.19 protein.
          Length = 110

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +3

Query: 279 PYCMRSCKTANHYCPQCKAFLGSY 350
           P+C+ + K A HYCP C+A++G+Y
Sbjct: 80  PFCVETFKDAEHYCPSCRAWIGTY 103


>AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical
           protein Y87G2A.18 protein.
          Length = 118

 Score = 34.3 bits (75), Expect = 0.068
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 264 CGCLFPYCMRSCKTANHYCPQCKAFLGSY 350
           C C  P+ +      NH CP CK FLG +
Sbjct: 87  CFCCVPFFLDQLLDVNHSCPACKKFLGRF 115


>Z81464-6|CAB03856.2|  102|Caenorhabditis elegans Hypothetical
           protein C08E8.1 protein.
          Length = 102

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +3

Query: 258 CCCGCLFPYCMRSCKTANHYCPQCKAFL 341
           CC   LF  C    K  NH CP C   L
Sbjct: 66  CCFPFLFFLCCDVSKDVNHNCPSCGMLL 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,640,247
Number of Sequences: 27780
Number of extensions: 281332
Number of successful extensions: 817
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)