Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O22
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.33 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.00 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.0  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   3.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 41  TTAARFGDPSKHFTANDSHHIRNS 112
           TT     DP+ HF  N SH I+ S
Sbjct: 679 TTEKLSTDPNTHFQVNQSHGIKRS 702


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 64  SLQTLHRERQSSHPEQQHPGHRESYVPDRRALRVKHATKLLS 189
           +LQT+  +    HP+      ++  +PD R L   H+ KLL+
Sbjct: 369 ALQTVLAQNHPQHPDILRELLKK--IPDLRTLNTLHSEKLLA 408


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 393 IYNTYAL*NIIRKVCKNRGMPCIE 322
           I+N   L N++ K  KN+ +P IE
Sbjct: 34  IFNEDKLDNLMDKQFKNKSLPVIE 57


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 481 HNKYRLLFFTLDIKIFS*FYYISLFLKHS 567
           HNK   L  TL  K FS + + ++F+K+S
Sbjct: 263 HNKDDDLILTLGKKEFSHYEHQNVFVKNS 291


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 246 VISSCCCGC 272
           V+ SCCC C
Sbjct: 7   VVMSCCCWC 15


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +1

Query: 487 KYRLLFFTLDIKIFS*FYYISLFLKHSIS 573
           +Y+L +F  D+++ + +YY+   L + +S
Sbjct: 218 EYKLDYFMEDVELNAYYYYMREMLPYWMS 246


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +1

Query: 487 KYRLLFFTLDIKIFS*FYYISLFLKHSIS 573
           +Y+L +F  D+++ + +YY+   L + +S
Sbjct: 218 EYKLDYFMEDVELNAYYYYMREMLPYWMS 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,469
Number of Sequences: 438
Number of extensions: 3943
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)