Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O21
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    31   0.059
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   2.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    24   9.0  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    24   9.0  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 31.1 bits (67), Expect = 0.059
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -2

Query: 109 NVNEVTSTGSLVRIGVPQGSILGPFLFLLYINDFL 5
           ++ ++ ++  L ++G+PQGSIL  FL   Y+ D +
Sbjct: 689 HIVKIGNSQYLQKVGIPQGSILSSFLCHFYMEDLI 723


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 70  IGVPQGSILGPFLFLLYIN 14
           +G PQGSI+ P L  +Y++
Sbjct: 419 VGTPQGSIVSPILANIYLH 437


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 194  NTQTETLRCF*HLCPLHGLLVNKPMSESK 108
            NT++  L C  H    H +L+N  +  SK
Sbjct: 1118 NTRSNALSCIDHYLNAHKMLLNTTLDISK 1146


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 54  PCGTPILTNDPVEVTSFTFTF 116
           P  TP L  D V ++ FTF F
Sbjct: 282 PYNTPGLDGDSVRMSPFTFVF 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,420,108
Number of Sequences: 5004
Number of extensions: 25198
Number of successful extensions: 51
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)