Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_O18
(374 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 27 0.73
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 27 0.96
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.3
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 3.9
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 5.1
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 24 6.8
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S... 24 9.0
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 24 9.0
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 24 9.0
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 27.5 bits (58), Expect = 0.73
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -2
Query: 112 RQSRSCSLT*RQ*EKSQYVENQILHIKAHTNST 14
+QSR+ T ++ E+ +++ NQ+L I + NST
Sbjct: 378 KQSRTSQFTTKK-ERDEWIRNQLLQINRNINST 409
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 27.1 bits (57), Expect = 0.96
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 124 SIFSYDRCLRIHIVMSGECARVGISMSFLGPF 219
SI D R+H V GE RV + M L PF
Sbjct: 116 SILDIDLRWRMHAVSDGERRRVQLCMGLLRPF 147
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 1.3
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 247 LSTIKYVTTDQIETTNCTKTSS---AETPLCTTQLRT 348
+S+ VT+ + TTNCT ++S TP+ +T L T
Sbjct: 516 ISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLAT 552
Score = 25.8 bits (54), Expect = 2.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +1
Query: 265 VTTDQIETTNCTKTSS---AETPLCTTQLRT 348
VT+ + TTNCT ++S TP+ +T L T
Sbjct: 440 VTSTPLATTNCTTSTSVPYTSTPVTSTPLTT 470
Score = 25.8 bits (54), Expect = 2.2
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +1
Query: 265 VTTDQIETTNCTKTSS---AETPLCTTQLRT 348
VT+ + TTNCT ++S TP+ +T L T
Sbjct: 463 VTSTPLTTTNCTTSTSIPYTSTPVTSTPLTT 493
Score = 24.6 bits (51), Expect = 5.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 277 QIETTNCTKTSSAETPLCT 333
+I +T+CT +SA TP+ T
Sbjct: 71 EITSTSCTTDTSASTPIIT 89
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.0 bits (52), Expect = 3.9
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 368 STRKNSNVRSCVVHKGVSAELVFVQ 294
S KNS VRS + HKG+ VFVQ
Sbjct: 61 SENKNSFVRSLLQHKGID---VFVQ 82
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 24.6 bits (51), Expect = 5.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 251 QQLSMLQQIRSRLLTAQK 304
Q L+M+ Q+RSRLLT +
Sbjct: 216 QVLTMISQLRSRLLTTSR 233
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 24.2 bits (50), Expect = 6.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 128 IDWRSETITKLFFN 87
+DWRSE I FFN
Sbjct: 314 LDWRSEGIRSWFFN 327
>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 23.8 bits (49), Expect = 9.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 265 VTTDQIETTNCTKTSSAETP 324
VT DQ NC SS TP
Sbjct: 143 VTVDQKSVMNCVSASSNNTP 162
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 23.8 bits (49), Expect = 9.0
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -3
Query: 210 KEAHRNAYSCALATHNNVDPKTPVVAEDRLAVRDN 106
++ +AY + T ++PK+P++AE + V +N
Sbjct: 595 RDTSMSAYMSSRKTFE-INPKSPIIAELKKKVEEN 628
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 23.8 bits (49), Expect = 9.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 218 FRKYQGDINFCQQLSMLQQIRSRLLTA 298
F+K GD+ FC Q S+ Q+ + +T+
Sbjct: 314 FQKELGDLVFCTQTSLQQRQKLEEITS 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,565,576
Number of Sequences: 5004
Number of extensions: 29417
Number of successful extensions: 89
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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