Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O18
         (374 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0591 + 19792694-19792738,19794190-19794509,19795104-197951...    30   0.52 
09_04_0663 + 19299275-19299479,19300842-19300948,19301222-193014...    29   0.90 
03_02_0803 + 11365959-11366390,11366470-11366502,11367158-113672...    28   2.1  
07_03_1583 - 27898375-27898436,27898455-27898539,27898621-278987...    27   3.6  
02_05_0308 - 27754340-27754634,27755591-27755696,27755781-277558...    27   6.3  
02_04_0365 - 22384981-22385930,22386298-22386364,22386486-22386545     27   6.3  

>07_03_0591 +
           19792694-19792738,19794190-19794509,19795104-19795161,
           19798000-19798056,19798373-19798440,19798454-19798543,
           19798619-19798820,19798902-19798988,19799642-19799719,
           19799815-19800040,19800260-19800483,19801988-19802014,
           19802470-19802518,19802594-19802688,19802778-19802864,
           19802973-19803100,19803198-19803294,19803563-19803788,
           19803888-19804294
          Length = 856

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 46  FGFLRIAISLIVFRLKNNFVIVSDRQSIFSYDRCLRIHIVMSGECARV 189
           FG L +  S I+F +KN F++V+   S+  Y++  R   V +  C  V
Sbjct: 803 FGLLMVITSFIIFHVKNEFLLVTALCSMSFYNQA-RFDAVSNQTCGFV 849


>09_04_0663 +
           19299275-19299479,19300842-19300948,19301222-19301413,
           19301933-19302043,19302374-19302673
          Length = 304

 Score = 29.5 bits (63), Expect = 0.90
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 309 TCFCAVSSLDLICCNILNC*QKFMSP*YFRKRSKEAHRNAYSCALATHNNVDP 151
           TCFC+  SL  + C IL+C     S  Y    + +  R  YSC+   H+   P
Sbjct: 240 TCFCSAKSLIELTCCILDC---TTSLEYL---TLDTTRGVYSCSTGKHSQCFP 286


>03_02_0803 +
           11365959-11366390,11366470-11366502,11367158-11367214,
           11367784-11367945,11367987-11368139,11368218-11368295,
           11368377-11368469,11368981-11369071,11369091-11369209
          Length = 405

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 97  NFVIVSDRQSIFSYDRCLRIHIVMSGECARVGISMSFLGPF 219
           N  +V  R  I   D   R+H    G+  RV I M  L PF
Sbjct: 165 NVTVVLQRIHILDIDLAWRMHKASDGQRRRVQICMGLLKPF 205


>07_03_1583 -
           27898375-27898436,27898455-27898539,27898621-27898768,
           27899009-27899028,27899135-27899236,27899743-27899812,
           27899956-27900012,27902324-27902484,27902742-27902761,
           27902997-27903069,27903077-27903169,27903456-27903496,
           27903597-27903858
          Length = 397

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 28  GPLYEEFGFLRIAISLIVFRL-KNNFVIVSDRQSIFSYDRCLRIHIVMS 171
           GP+ E F FL I  S I F L  ++F+  S    IF   R L+  + +S
Sbjct: 349 GPIVEAFSFLAIGTSYIGFVLGLSDFIADSQSNHIFQLIRGLKEKLSIS 397


>02_05_0308 -
           27754340-27754634,27755591-27755696,27755781-27755855,
           27756039-27757410
          Length = 615

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 275 SVVTYLIVDKSLCHLDIFEKGPRKLIEMPTLAHSPLI 165
           +VVTY ++ + LCH    ++G + L  M      P++
Sbjct: 343 NVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIV 379


>02_04_0365 - 22384981-22385930,22386298-22386364,22386486-22386545
          Length = 358

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -2

Query: 241 YVTLIFSKKVQGSSSKCLLLRTRHS*QCGSEDTCRS*RSTGGQRQSRSCSL 89
           ++ L   K++  +  +C   R ++       +T  S R  G  R SRSCS+
Sbjct: 304 HLCLFCHKRILEADGRCPACRKQYISASSGGETVGSEREMGNLRLSRSCSM 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,630,972
Number of Sequences: 37544
Number of extensions: 174813
Number of successful extensions: 450
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)