Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O18
         (374 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   0.51 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   0.51 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   0.51 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    20   8.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   8.3  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 0.51
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -1

Query: 368 STRKNSNVRSCVVHKGVSAELVFVQLVVSI*SVVTYLIVDKSLCHLDI 225
           +T  N  +R  + H G     + + +  S    + Y  +D+ LCH++I
Sbjct: 111 ATTSNEFIR--IHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEI 156


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 0.51
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -1

Query: 368 STRKNSNVRSCVVHKGVSAELVFVQLVVSI*SVVTYLIVDKSLCHLDI 225
           +T  N  +R  + H G     + + +  S    + Y  +D+ LCH++I
Sbjct: 111 ATTSNEFIR--IHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEI 156


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.2 bits (50), Expect = 0.51
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -1

Query: 368 STRKNSNVRSCVVHKGVSAELVFVQLVVSI*SVVTYLIVDKSLCHLDI 225
           +T  N  +R  + H G     + + +  S    + Y  +D+ LCH++I
Sbjct: 50  ATTSNEFIR--IHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEI 95


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 261  VCYNRSDRDY*LH 299
            VCY+ +D D+ LH
Sbjct: 1070 VCYSPNDEDFVLH 1082


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 332 QHNFERWNSYEWN 370
           QH   RWN+Y+ N
Sbjct: 9   QHYCLRWNNYQSN 21


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 230 QGDINFCQQLSMLQQIRSRLLTAQKQVQLRPPCAQH 337
           QG+    QQ+   QQ++ ++  A   VQ      QH
Sbjct: 763 QGNSWSQQQVQQAQQVQQQMQAAMAAVQQSQQRHQH 798


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 199 MSFLGPFSKISR*HKLLSTI 258
           +SFLGP   +S   K+L  I
Sbjct: 98  LSFLGPIKSLSLSIKMLERI 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,320
Number of Sequences: 438
Number of extensions: 2114
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)