Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O16
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   3.5  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    26   3.5  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   4.6  
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    25   8.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   8.1  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   8.1  

>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +2

Query: 215 TQPAAFPSSVHSRTNR*THAASAFARSQ*PDFKMNF 322
           TQ  +F SS H R     H A+A ARS  P F MN+
Sbjct: 55  TQSRSF-SSPHQRA----HNAAALARSGGPGFSMNY 85


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 34  FARQYASHNLICENIAL 84
           FARQ+ S NL C+N+ +
Sbjct: 865 FARQFKSSNLFCDNMKM 881


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 237 PPSIQGPIVEPMPPRLSHDHNNPTS 311
           PP+   PI  P+PP  S   +NP S
Sbjct: 193 PPTSSFPIQPPLPPSRSISISNPQS 217


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 175 RLKLIVRMLRSTAY-AAGSVPLLRPFKDQSLNPCRLGFRTIT 297
           R  L+V+  ++ A   A S+PLL    D  LNP  +GF  ++
Sbjct: 87  RKTLLVKNKKTGAIETAPSIPLLGVRFDIMLNPVNIGFTNLS 128


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 231 SPPPSIQGPIVEPMPPRLSHDHNNP 305
           SPPPS Q P        L  D+N P
Sbjct: 166 SPPPSFQPPSAAAPATSLPSDYNPP 190


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 382 HCWSLFARVNISVNT 338
           H WSLFA V+  VNT
Sbjct: 270 HVWSLFASVSQMVNT 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,763
Number of Sequences: 5004
Number of extensions: 33878
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)