Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O16
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    30   1.0  
U40413-2|AAK39174.1|  296|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U40800-4|AAO91742.1|  763|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AY818713-1|AAX35669.1|  691|Caenorhabditis elegans LIN-65S protein.    29   2.4  
AY818712-1|AAX35668.1|  728|Caenorhabditis elegans LIN-65L protein.    29   2.4  
AC025726-21|AAK73935.3|  728|Caenorhabditis elegans Abnormal cel...    29   2.4  
Z81518-2|CAE11300.1|  340|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AC024849-4|AAL27260.2|  152|Caenorhabditis elegans Hypothetical ...    28   4.2  
X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.        27   5.5  
U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of l...    27   5.5  
U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of l...    27   5.5  
U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of l...    27   5.5  
AF003383-4|ABO16469.1|  204|Caenorhabditis elegans Hypothetical ...    27   7.3  
AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi dom...    27   7.3  
Z70684-9|CAA94605.1|   95|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    27   9.7  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    27   9.7  
AF043702-10|AAK21498.1|  130|Caenorhabditis elegans Hypothetical...    27   9.7  

>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 225 QRSPPPSIQGP-IVEPMPPRLSHDHNNPTSK*T 320
           QRSPPP    P +  P  P  S  H+N T   T
Sbjct: 354 QRSPPPCASAPPVAPPTAPSTSFQHHNSTGNLT 386


>U40413-2|AAK39174.1|  296|Caenorhabditis elegans Hypothetical
           protein C18B2.4 protein.
          Length = 296

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 392 QNAGQFSKQKQQVGKQGPEPVNFPPR 469
           QN G +  Q QQ G+  P P N PP+
Sbjct: 222 QNVGAYPGQPQQPGQYHPYPTNQPPQ 247


>U40800-4|AAO91742.1|  763|Caenorhabditis elegans Hypothetical
           protein D2096.12 protein.
          Length = 763

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 371 APTMSINQNAGQFSKQKQQVGKQGPEPVNFPPRYHPPP 484
           APT +   N+ + S    Q  +  P PV FPP    PP
Sbjct: 53  APTQTTTGNSLKSSASSTQSTEAKPPPVQFPPPSKNPP 90


>AY818713-1|AAX35669.1|  691|Caenorhabditis elegans LIN-65S protein.
          Length = 691

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 404 QFSKQKQQVGKQGPE--PVNFPPRYHPPPP 487
           Q  +Q+QQ   Q  +  P+   PR+HPPPP
Sbjct: 379 QAFEQQQQFQHQHHQHRPIMLAPRHHPPPP 408


>AY818712-1|AAX35668.1|  728|Caenorhabditis elegans LIN-65L protein.
          Length = 728

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 404 QFSKQKQQVGKQGPE--PVNFPPRYHPPPP 487
           Q  +Q+QQ   Q  +  P+   PR+HPPPP
Sbjct: 416 QAFEQQQQFQHQHHQHRPIMLAPRHHPPPP 445


>AC025726-21|AAK73935.3|  728|Caenorhabditis elegans Abnormal cell
           lineage protein 65,isoform a protein.
          Length = 728

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 404 QFSKQKQQVGKQGPE--PVNFPPRYHPPPP 487
           Q  +Q+QQ   Q  +  P+   PR+HPPPP
Sbjct: 416 QAFEQQQQFQHQHHQHRPIMLAPRHHPPPP 445


>Z81518-2|CAE11300.1|  340|Caenorhabditis elegans Hypothetical
           protein F28D9.2a protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 411 LNCPAFWLIDIVGAYSLASTSQ 346
           L CP F+L  ++G Y+LA T++
Sbjct: 68  LVCPGFYLFPLMGGYNLAETNR 89


>Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical
           protein K11H3.4 protein.
          Length = 717

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 186 NCANATVHGLRSRQRSPPPSIQGPIVEPMPPRLSHD 293
           NC   +   + SR +S PP     + EP PP+  +D
Sbjct: 523 NCDRQSTSAVDSRNQSVPPVFSKLLQEPPPPKKRND 558


>AC024849-4|AAL27260.2|  152|Caenorhabditis elegans Hypothetical
           protein Y67D8B.5 protein.
          Length = 152

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 377 TMSINQNAGQFSKQKQQVGKQGPEPVNFPPRYHPPP 484
           TM + +   + SKQ +   K GPEP   PP   P P
Sbjct: 34  TMIVVEEDPKISKQAKMEKKDGPEPPPPPPLNVPEP 69


>X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 219 SRQRSPPPSIQGPIVEPMPPRLSHDHNNP 305
           +RQR+P  SIQ P   P+PPRLS   + P
Sbjct: 547 NRQRAP--SIQAP---PLPPRLSASEHQP 570


>U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform a protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 219 SRQRSPPPSIQGPIVEPMPPRLSHDHNNP 305
           +RQR+P  SIQ P   P+PPRLS   + P
Sbjct: 547 NRQRAP--SIQAP---PLPPRLSASEHQP 570


>U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform b protein.
          Length = 565

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 219 SRQRSPPPSIQGPIVEPMPPRLSHDHNNP 305
           +RQR+P  SIQ P   P+PPRLS   + P
Sbjct: 530 NRQRAP--SIQAP---PLPPRLSASEHQP 553


>U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform c protein.
          Length = 523

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 219 SRQRSPPPSIQGPIVEPMPPRLSHDHNNP 305
           +RQR+P  SIQ P   P+PPRLS   + P
Sbjct: 488 NRQRAP--SIQAP---PLPPRLSASEHQP 511


>AF003383-4|ABO16469.1|  204|Caenorhabditis elegans Hypothetical
           protein ZC250.5 protein.
          Length = 204

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 141 ADNNTHYKLARVQWLKFC 88
           A+ NTHY   +++W+ +C
Sbjct: 9   AERNTHYDKKKLEWVNYC 26


>AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi
           domain-containing protein2 protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 440 GPEPVNFPPRYHPPPP 487
           G  PV  PP  HPPPP
Sbjct: 18  GFPPVTAPPGLHPPPP 33


>Z70684-9|CAA94605.1|   95|Caenorhabditis elegans Hypothetical
           protein F28D1.11 protein.
          Length = 95

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 435 LPTCCFCLLNCPAFWLIDIVGAYSLASTSQSIHNF 331
           LP C  CL+N   F+ +  +G Y++ +    +  F
Sbjct: 33  LPECLHCLVNYAPFFAVLFLGIYAVFNVVYGVATF 67


>Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical
           protein F18H3.3b protein.
          Length = 566

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 374 PTMSINQNAGQFSKQKQQVGKQGPEPVN--FPP 466
           PT +    AG  + Q Q V +QGP P N  +PP
Sbjct: 18  PTAAATVVAGAVAGQPQAVIQQGPPPTNIGYPP 50


>Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical
           protein F18H3.3a protein.
          Length = 692

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 374 PTMSINQNAGQFSKQKQQVGKQGPEPVN--FPP 466
           PT +    AG  + Q Q V +QGP P N  +PP
Sbjct: 18  PTAAATVVAGAVAGQPQAVIQQGPPPTNIGYPP 50


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 434 KQGPEPVNFPPRYHPPPP 487
           +Q P P   PP Y PPPP
Sbjct: 129 QQQPPPPPPPPHYPPPPP 146


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 431 GKQGPEPVNFPPRYHPPP 484
           G  GP P  FPP   PPP
Sbjct: 442 GAYGPPPTGFPPVGAPPP 459


>AF043702-10|AAK21498.1|  130|Caenorhabditis elegans Hypothetical
           protein W03D8.3 protein.
          Length = 130

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 234 PPPSIQGPIVEPMPPRLSHDHNNPTSK 314
           PPPS Q   V P  PR +  H  PT++
Sbjct: 17  PPPSQQPAAVAPRAPRPAPGHPAPTNE 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,520,749
Number of Sequences: 27780
Number of extensions: 210520
Number of successful extensions: 896
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)