Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O16
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   5.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.0  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   9.3  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   9.3  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   9.3  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   9.3  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   9.3  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   9.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 246  IQGPIVEPMPPRLSHDHNN 302
            + G    P PP  +HD NN
Sbjct: 1853 VSGSPEPPPPPPRNHDQNN 1871



 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 419  KQQVGKQGPEPVNFPPRYHPPPP 487
            ++ VG     PV+  P   PPPP
Sbjct: 1842 RRSVGSARNIPVSGSPEPPPPPP 1864


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -3

Query: 270 WVQRLVLEWTEEGNAAGCVGRG 205
           W Q   ++W +E  + G  G G
Sbjct: 317 WFQNRRMKWKKENKSKGTPGSG 338


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -3

Query: 435 LPTCCFCLLNCPAFWL 388
           +PTC   +++  +FW+
Sbjct: 253 IPTCLIVIMSWVSFWI 268


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 255 PIVEPMPPRLSHDHNNPT 308
           P + P    +SH++N PT
Sbjct: 860 PFLIPEQTSISHENNQPT 877


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 470 NAVES*PVPDPVY 432
           N +E  PVP PVY
Sbjct: 107 NYIEQIPVPVPVY 119


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 470 NAVES*PVPDPVY 432
           N +E  PVP PVY
Sbjct: 107 NYIEQIPVPVPVY 119


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 470 NAVES*PVPDPVY 432
           N +E  PVP PVY
Sbjct: 107 NYIEQIPVPVPVY 119


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 470 NAVES*PVPDPVY 432
           N +E  PVP PVY
Sbjct: 107 NYIEQIPVPVPVY 119


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 470 NAVES*PVPDPVY 432
           N +E  PVP PVY
Sbjct: 107 NHIEQIPVPVPVY 119


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 470 NAVES*PVPDPVY 432
           N +E  PVP PVY
Sbjct: 107 NYIEQIPVPVPVY 119


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +2

Query: 443 PEPVNFPPRYHPPPP 487
           P  V+ PP   P PP
Sbjct: 287 PGEVDLPPETQPTPP 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,676
Number of Sequences: 438
Number of extensions: 2967
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)