Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_O15
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 340 8e-95
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 333 1e-92
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 160 1e-40
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 105 6e-24
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 29 0.38
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.89
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 27 2.0
SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.6
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 26 4.7
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 26 4.7
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 4.7
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 6.2
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 340 bits (836), Expect = 8e-95
Identities = 151/196 (77%), Positives = 171/196 (87%)
Frame = +3
Query: 3 TRVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 182
T VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNLDIERPTY NLNRLI Q+VSSI
Sbjct: 183 TSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSI 242
Query: 183 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEP 362
TASLRF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE SV EITN CFEP
Sbjct: 243 TASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEP 302
Query: 363 ANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQ 542
NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+
Sbjct: 303 YNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYE 362
Query: 543 PPTVVPGGDLANVQRA 590
PP VPG +A V RA
Sbjct: 363 PPQHVPGSGIAKVNRA 378
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 333 bits (818), Expect = 1e-92
Identities = 148/196 (75%), Positives = 169/196 (86%)
Frame = +3
Query: 3 TRVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 182
T VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICRRNLDIERP+Y NLNRLI Q+VSSI
Sbjct: 179 TSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSI 238
Query: 183 TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEP 362
TASLRF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE SV EITN CFEP
Sbjct: 239 TASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEP 298
Query: 363 ANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQ 542
NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +
Sbjct: 299 YNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDR 358
Query: 543 PPTVVPGGDLANVQRA 590
PP + G ++A V RA
Sbjct: 359 PPQHIEGSEIAKVDRA 374
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 160 bits (389), Expect = 1e-40
Identities = 72/180 (40%), Positives = 110/180 (61%)
Frame = +3
Query: 9 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 188
VVEPYN+ L+ H +E+SD F +DNEA+ I L I+ P+Y +LN L+ +++ +T
Sbjct: 179 VVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTT 238
Query: 189 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPAN 368
S RF G LN DL + N+VP+PR+HF +V +AP+ + + + +SV E+T F+ N
Sbjct: 239 SFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANN 298
Query: 369 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 548
MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+W P + PP
Sbjct: 299 MMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPP 358
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 105 bits (251), Expect = 6e-24
Identities = 53/186 (28%), Positives = 97/186 (52%), Gaps = 4/186 (2%)
Frame = +3
Query: 9 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 188
VV+PYNS+L ++D ++DN A+ I L + PT+ N+L+ ++S+ T
Sbjct: 182 VVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTT 241
Query: 189 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS---AEKAYHEQLSVAEITNACFE 359
+LR+ G +N DL +L+P PR HF L +Y P + E + +V ++
Sbjct: 242 TLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLL 301
Query: 360 PANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN 536
P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P +V ++
Sbjct: 302 PKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALS 361
Query: 537 YQPPTV 554
+ P +
Sbjct: 362 KKSPYI 367
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 29.5 bits (63), Expect = 0.38
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1
Query: 64 IVLSWSTMKPSMTSAAVTWILNARPTPTSIVLSARSYH 177
++ S+ T KP + TW +N R P S+ + H
Sbjct: 37 VIASYPTFKPVVNERCGTWYVNRRHAPISVYFKSTDGH 74
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 0.89
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 339 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 464
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 27.1 bits (57), Expect = 2.0
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +3
Query: 399 KYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAN 578
++ + Y + KDVN + TI +W PTG ++ Y V D N
Sbjct: 142 RHSSFAQYYLYNTETKDVNM-LGQDNEHWTISLAEWSPTGHQLSFVYNNDLYVRKND-GN 199
Query: 579 VQR 587
VQR
Sbjct: 200 VQR 202
>SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 135
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 218 DIEGAVETQRGGNR*YDLADKTIEVGVGRAFN 123
DIE E GN+ ++L +K I++ G+ FN
Sbjct: 58 DIEAFAEYALDGNKYFNLINKIIDMQDGKRFN 89
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 4.7
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 1/128 (0%)
Frame = +3
Query: 6 RVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 185
+V E +I + L SD +NE YDI +N + E N I + +
Sbjct: 46 KVEEVVEAINGSPDLLSESDVENAKNNEHTYDIDNKNFNFEPKNSVNKTETIREELDQAA 105
Query: 186 ASLRFDGALNVDLTE-FQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEP 362
+ + + L++ E F+ +V T A + A+ H + + E+ E
Sbjct: 106 SKILIE-TLDLHQKEGFEETIVTEE------ATDAVDLEAKGTTHGENDLDEVPTELNEL 158
Query: 363 ANQMVKCD 386
AN++V D
Sbjct: 159 ANEVVDVD 166
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = +1
Query: 76 WSTMKPSMTSAAVTWILNARPTPTSIVLSARSYHRLPPLCVSTAPSMSI*RSSRPTWC 249
W T KP + A W ++ + + + S +PP S A + + RP WC
Sbjct: 428 WRTHKPLILRATPQWFISLENERKTAIKALDSVKMIPP--NSRARLLGF-LNGRPEWC 482
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1
Query: 121 ILNARPTPTSIVLSARSYHRL 183
I NAR T V S RSYHRL
Sbjct: 1499 IKNARAKLTKAVKSLRSYHRL 1519
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 470 GSDSRVDVLGHDVTAVQHAAGHVFAVT 390
G+D + GH V +Q A G VF+ T
Sbjct: 421 GADEKPKYAGHVVAVLQRAPGQVFSGT 447
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,736
Number of Sequences: 5004
Number of extensions: 51143
Number of successful extensions: 172
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -