Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_O13
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 268 4e-72
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 262 2e-70
01_06_0715 + 31416338-31416500,31416601-31416710,31416808-314168... 33 0.16
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 33 0.21
07_01_1006 + 8528508-8529285,8529376-8529544,8530179-8530445,853... 31 0.64
03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647... 31 0.84
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898... 31 1.1
05_01_0522 - 4506667-4507254,4507474-4507824,4507967-4508163,450... 30 1.5
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 30 1.9
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 29 2.6
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 29 2.6
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913... 29 3.4
01_06_1495 + 37769982-37771496 29 3.4
03_01_0548 + 4099386-4099847,4100435-4101316 28 5.9
03_01_0547 + 4093196-4093657,4094267-4095148 28 5.9
03_01_0544 + 4082528-4082989,4083585-4084466 28 5.9
03_01_0543 + 4076981-4077442,4078145-4079026 28 5.9
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 268 bits (656), Expect = 4e-72
Identities = 128/160 (80%), Positives = 144/160 (90%), Gaps = 1/160 (0%)
Frame = +3
Query: 147 EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 323
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 324 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 503
SLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG V
Sbjct: 70 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAV 129
Query: 504 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVA 623
RRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+A
Sbjct: 130 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLA 169
Score = 35.1 bits (77), Expect = 0.052
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1
Query: 625 DELINAAKGPSNSYAIK 675
DELINAAKG SNSYAIK
Sbjct: 170 DELINAAKGSSNSYAIK 186
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 262 bits (642), Expect = 2e-70
Identities = 125/159 (78%), Positives = 142/159 (89%), Gaps = 1/159 (0%)
Frame = +3
Query: 150 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 326
+KLF WS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 327 LMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVR 506
LMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG VR
Sbjct: 72 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVR 131
Query: 507 RQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVA 623
RQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAEC+A
Sbjct: 132 RQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLA 170
Score = 35.1 bits (77), Expect = 0.052
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1
Query: 625 DELINAAKGPSNSYAIK 675
DELINAAKG SNSYAIK
Sbjct: 171 DELINAAKGSSNSYAIK 187
>01_06_0715 +
31416338-31416500,31416601-31416710,31416808-31416880,
31416988-31417135,31417867-31418133,31418234-31418576,
31418665-31418802,31419389-31419514,31419626-31419838,
31419918-31420164,31420247-31420446,31420538-31420891,
31420984-31421568
Length = 988
Score = 33.5 bits (73), Expect = 0.16
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 660 VRWALGSIDKFIKRHIRLWF 601
+RWALGS++ F+ RH LW+
Sbjct: 727 LRWALGSVEIFLSRHCPLWY 746
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 33.1 bits (72), Expect = 0.21
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 660 VRWALGSIDKFIKRHIRLWF 601
+RWALGS++ F+ RH LW+
Sbjct: 817 LRWALGSVEIFMSRHCPLWY 836
>07_01_1006 +
8528508-8529285,8529376-8529544,8530179-8530445,
8530533-8530878,8530964-8531101,8531197-8531322,
8531422-8531634,8531721-8531863,8531891-8532009,
8532099-8532295,8532379-8532729,8532811-8533395
Length = 1143
Score = 31.5 bits (68), Expect = 0.64
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 660 VRWALGSIDKFIKRHIRLWF 601
+RWALGS++ F +H LW+
Sbjct: 883 LRWALGSVEIFFSKHCPLWY 902
>03_06_0596 +
34964109-34964189,34964286-34964481,34964567-34964775,
34964868-34964970,34965053-34965227,34965617-34965883,
34965966-34966311,34966396-34966533,34966645-34966770,
34966866-34967078,34967171-34967462,34967559-34967755,
34967844-34968194,34968290-34968874
Length = 1092
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 660 VRWALGSIDKFIKRHIRLWF 601
+RWALGSI+ F H LW+
Sbjct: 832 LRWALGSIEIFFSNHCPLWY 851
>07_03_0123 -
13688562-13689146,13689233-13689583,13689665-13689861,
13689954-13690072,13690103-13690245,13690332-13690544,
13690649-13690774,13690891-13691028,13691109-13691454,
13691532-13691798,13691939-13691983,13692148-13692349,
13692405-13692507,13692599-13692810,13692891-13693113,
13693211-13693291
Length = 1116
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 660 VRWALGSIDKFIKRHIRLWF 601
+RWALGS++ F H LW+
Sbjct: 856 LRWALGSVEIFFSNHCPLWY 875
>05_01_0522 -
4506667-4507254,4507474-4507824,4507967-4508163,
4508324-4508582,4508656-4508868,4508946-4509071,
4509159-4509296,4509376-4509721,4509822-4510088,
4510427-4510616,4510700-4510784,4510885-4511072,
4511262-4511457,4512027-4512113
Length = 1076
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 660 VRWALGSIDKFIKRHIRLWF 601
+RWALGS++ + RH +W+
Sbjct: 815 LRWALGSVEILLSRHCPIWY 834
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +3
Query: 78 EEVADAGGMVVDNMPLPQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 251
+E+ G MVV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 214 QEIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
>07_01_0766 -
5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 29.5 bits (63), Expect = 2.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 660 VRWALGSIDKFIKRHIRLWF 601
+RWALGS++ RH +W+
Sbjct: 827 LRWALGSVEILFSRHCPIWY 846
>03_06_0389 -
33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 29.5 bits (63), Expect = 2.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 660 VRWALGSIDKFIKRHIRLWF 601
+RWALGS++ RH +W+
Sbjct: 813 LRWALGSVEILFSRHCPIWY 832
>07_03_0100 +
13389899-13390219,13390723-13390841,13391220-13391315,
13391481-13391553,13392055-13392123
Length = 225
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 592 LNAASRAPVHNNQIAWLTRRNGDTSTA*RRTVPARPILVESSLGPE 455
L+A+SR P ++I RR G + + RR+ P +P + PE
Sbjct: 49 LHASSRVPAARHRIVCPCRRRGGSPSLTRRSSPEKPGPFSQTRSPE 94
>01_06_1495 + 37769982-37771496
Length = 504
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 463 QEKTPPGSVVLVQFDVKPSMCPH-YVVLTRLSGYCAQEHVRLHL 591
+E PPGS V++Q + + + PH + L G+ ++R+H+
Sbjct: 240 RENLPPGSYVVLQLEKEEILAPHTHFCLICGKGFKRDANLRMHM 283
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 116 VVHNHAARVGDFFGPVLLSHISHFYSQF 33
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 116 VVHNHAARVGDFFGPVLLSHISHFYSQF 33
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 116 VVHNHAARVGDFFGPVLLSHISHFYSQF 33
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 116 VVHNHAARVGDFFGPVLLSHISHFYSQF 33
++ NH ++G+ + PVL H SH +F
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,155,955
Number of Sequences: 37544
Number of extensions: 416518
Number of successful extensions: 1043
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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