Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_O13
(675 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5 pr... 316 5e-86
BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5 pr... 316 5e-86
AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5 va... 316 5e-86
AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5 pr... 316 5e-86
U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5 prot... 312 1e-84
AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5 va... 92 1e-18
AB007149-1|BAA25815.1| 55|Homo sapiens ribosomal protein S5 pr... 55 2e-07
D86966-1|BAA13202.2| 1317|Homo sapiens KIAA0211 protein. 31 4.9
BC112234-1|AAI12235.1| 1267|Homo sapiens zinc finger protein 592... 31 4.9
BC112232-1|AAI12233.1| 1267|Homo sapiens zinc finger protein 592... 31 4.9
BC094688-1|AAH94688.1| 1267|Homo sapiens zinc finger protein 592... 31 4.9
BC033758-1|AAH33758.1| 380|Homo sapiens centaurin, alpha 2 prot... 31 4.9
>BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 316 bits (776), Expect = 5e-86
Identities = 149/166 (89%), Positives = 158/166 (95%)
Frame = +3
Query: 126 PQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 305
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KRFRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 306 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 485
VERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRI
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRI 128
Query: 486 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVA 623
GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAEC+A
Sbjct: 129 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLA 174
Score = 35.1 bits (77), Expect = 0.23
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1
Query: 625 DELINAAKGPSNSYAIK 675
DELINAAKG SNSYAIK
Sbjct: 175 DELINAAKGSSNSYAIK 191
>BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 316 bits (776), Expect = 5e-86
Identities = 149/166 (89%), Positives = 158/166 (95%)
Frame = +3
Query: 126 PQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 305
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KRFRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 306 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 485
VERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRI
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRI 128
Query: 486 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVA 623
GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAEC+A
Sbjct: 129 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLA 174
Score = 35.1 bits (77), Expect = 0.23
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1
Query: 625 DELINAAKGPSNSYAIK 675
DELINAAKG SNSYAIK
Sbjct: 175 DELINAAKGSSNSYAIK 191
>AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5
variant protein.
Length = 204
Score = 316 bits (776), Expect = 5e-86
Identities = 149/166 (89%), Positives = 158/166 (95%)
Frame = +3
Query: 126 PQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 305
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KRFRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 306 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 485
VERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRI
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRI 128
Query: 486 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVA 623
GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAEC+A
Sbjct: 129 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLA 174
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +1
Query: 625 DELINAAKGPSNSYAIK 675
DELINAAKG SN YAIK
Sbjct: 175 DELINAAKGSSNFYAIK 191
>AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 316 bits (776), Expect = 5e-86
Identities = 149/166 (89%), Positives = 158/166 (95%)
Frame = +3
Query: 126 PQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 305
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KRFRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 306 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 485
VERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRI
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRI 128
Query: 486 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVA 623
GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAEC+A
Sbjct: 129 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLA 174
Score = 35.1 bits (77), Expect = 0.23
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1
Query: 625 DELINAAKGPSNSYAIK 675
DELINAAKG SNSYAIK
Sbjct: 175 DELINAAKGSSNSYAIK 191
>U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 312 bits (765), Expect = 1e-84
Identities = 147/166 (88%), Positives = 156/166 (93%)
Frame = +3
Query: 126 PQPADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 305
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA FRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANAFRKAQCPI 68
Query: 306 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRI 485
VERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPREDSTRI
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRI 128
Query: 486 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVA 623
GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAEC+A
Sbjct: 129 GRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLA 174
Score = 35.1 bits (77), Expect = 0.23
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1
Query: 625 DELINAAKGPSNSYAIK 675
DELINAAKG SNSYAIK
Sbjct: 175 DELINAAKGSSNSYAIK 191
>AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5
variant protein.
Length = 107
Score = 92.3 bits (219), Expect = 1e-18
Identities = 45/52 (86%), Positives = 46/52 (88%)
Frame = +3
Query: 291 AQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTA 446
AQCPIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGE L LV A
Sbjct: 1 AQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGEVGLCGLVRA 52
>AB007149-1|BAA25815.1| 55|Homo sapiens ribosomal protein S5
protein.
Length = 55
Score = 55.2 bits (127), Expect = 2e-07
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +3
Query: 549 AIWLLCTGAREAAFRNIKTIAECVA 623
AIWLLCTGAREAAFRNIKTIAEC+A
Sbjct: 1 AIWLLCTGAREAAFRNIKTIAECLA 25
Score = 35.1 bits (77), Expect = 0.23
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1
Query: 625 DELINAAKGPSNSYAIK 675
DELINAAKG SNSYAIK
Sbjct: 26 DELINAAKGSSNSYAIK 42
>D86966-1|BAA13202.2| 1317|Homo sapiens KIAA0211 protein.
Length = 1317
Score = 30.7 bits (66), Expect = 4.9
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 207 QDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNN 350
Q+++ +E Y ++ S GR KR+ QC NSL H RNN
Sbjct: 1039 QEWVPDRESYVSHMKKSHGRTL-KRYPCRQCEQSFHTPNSLRKHIRNN 1085
>BC112234-1|AAI12235.1| 1267|Homo sapiens zinc finger protein 592
protein.
Length = 1267
Score = 30.7 bits (66), Expect = 4.9
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 207 QDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNN 350
Q+++ +E Y ++ S GR KR+ QC NSL H RNN
Sbjct: 989 QEWVPDRESYVSHMKKSHGRTL-KRYPCRQCEQSFHTPNSLRKHIRNN 1035
>BC112232-1|AAI12233.1| 1267|Homo sapiens zinc finger protein 592
protein.
Length = 1267
Score = 30.7 bits (66), Expect = 4.9
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 207 QDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNN 350
Q+++ +E Y ++ S GR KR+ QC NSL H RNN
Sbjct: 989 QEWVPDRESYVSHMKKSHGRTL-KRYPCRQCEQSFHTPNSLRKHIRNN 1035
>BC094688-1|AAH94688.1| 1267|Homo sapiens zinc finger protein 592
protein.
Length = 1267
Score = 30.7 bits (66), Expect = 4.9
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 207 QDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNN 350
Q+++ +E Y ++ S GR KR+ QC NSL H RNN
Sbjct: 989 QEWVPDRESYVSHMKKSHGRTL-KRYPCRQCEQSFHTPNSLRKHIRNN 1035
>BC033758-1|AAH33758.1| 380|Homo sapiens centaurin, alpha 2
protein.
Length = 380
Score = 30.7 bits (66), Expect = 4.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 58 WLRRTGPKKSPTRAAWLWTTCHYHSRLIFPKS 153
++ +TGPKK P + W CH RL++ K+
Sbjct: 261 FMEKTGPKKEPFKKRWFALDCH-ERRLLYYKN 291
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,350,823
Number of Sequences: 237096
Number of extensions: 2335172
Number of successful extensions: 8255
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8255
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -