Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_O12
(413 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 219 9e-58
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 217 2e-57
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 151 2e-37
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 3e-07
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 31 0.48
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 30 0.64
06_02_0197 - 12912818-12913411,12913505-12913732 30 0.84
06_01_0155 + 1152607-1152721,1152781-1154129 28 2.6
06_01_0152 + 1136202-1136316,1136376-1137583 28 2.6
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 27 5.9
12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311 27 7.8
06_03_1146 - 28004896-28005554,28005664-28005844 27 7.8
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 27 7.8
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968... 27 7.8
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239... 27 7.8
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 27 7.8
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 27 7.8
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 219 bits (534), Expect = 9e-58
Identities = 99/134 (73%), Positives = 112/134 (83%)
Frame = +2
Query: 11 RVRAIVMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEK 190
R ++ MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK
Sbjct: 165 RCPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEK 223
Query: 191 VGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGD 370
+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGD
Sbjct: 224 IGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGD 283
Query: 371 IPGVRFKVVKVANV 412
IPGVRFKVVKV+ V
Sbjct: 284 IPGVRFKVVKVSGV 297
Score = 217 bits (531), Expect = 2e-57
Identities = 98/128 (76%), Positives = 109/128 (85%)
Frame = +2
Query: 29 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 208
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 209 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 388
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 389 KVVKVANV 412
KVVKV+ V
Sbjct: 120 KVVKVSGV 127
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 217 bits (531), Expect = 2e-57
Identities = 98/128 (76%), Positives = 109/128 (85%)
Frame = +2
Query: 29 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 208
MGK RG+ RK HRR QRWADK +KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 209 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 388
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 389 KVVKVANV 412
KVVKV+ V
Sbjct: 120 KVVKVSGV 127
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 151 bits (367), Expect = 2e-37
Identities = 72/112 (64%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Frame = +2
Query: 8 DRVRAIVMG-KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVL 184
+RVRA G K G+ RK HRR QRWADK +KK+H G WK PF G+SHAKGIVL
Sbjct: 64 ERVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVL 122
Query: 185 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 340
EK+G+EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 123 EKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 3e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +2
Query: 320 DEVLVAGFGRKGHAVGDIPGVRFKVVK 400
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 30.7 bits (66), Expect = 0.48
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -3
Query: 402 TLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 271
TL+ LNL G SP P P P + SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 30.3 bits (65), Expect = 0.64
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 1 ARGSCSRYRNG*TSGYSHGAQARESSSRAAMGRQGIQKSP 120
A+ +C R +G +GY HG + + SSR + R G+ +P
Sbjct: 182 AKRACYRV-HGMATGYCHGCRCQRCSSRPSRDRDGVAWAP 220
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 29.9 bits (64), Expect = 0.84
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 245 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 147
V +H WL +A+ LQR +FR H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217
>06_01_0155 + 1152607-1152721,1152781-1154129
Length = 487
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 62 CAPCEYPEVYPLR*REHDPR 3
CAPC PE YP + DPR
Sbjct: 177 CAPCPMPECYPQQNALFDPR 196
>06_01_0152 + 1136202-1136316,1136376-1137583
Length = 440
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 62 CAPCEYPEVYPLR*REHDPR 3
CAPC PE YP + DPR
Sbjct: 177 CAPCPMPECYPQQNALFDPR 196
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 396 TTLNLTPGMSPTAWPLRPNPATNTSS 319
TT TP M+P P P+P TN ++
Sbjct: 310 TTTTPTPFMNPVTAPTMPSPVTNPAT 335
>12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311
Length = 901
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -2
Query: 397 NHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHECCHFLAVLNELY 242
+H+K V NS+ F I+LL+ + I C +L+V E Y
Sbjct: 376 SHMKEQWEQVHNSIGFVFSQQGIRDILLLSYYDLPINLKTCLLYLSVFPEDY 427
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 381 TPGMSPTAWPLRPNPATNTSSFSS 310
TP SP+ P+ P PA TS+ SS
Sbjct: 184 TPSPSPSVSPMAPAPAPTTSTPSS 207
>04_02_0034 -
8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 80 REQRWADKEFKKAHMGTRWKANPFGG 157
R +RW DK+ K R KA+PF G
Sbjct: 245 RTKRWHDKQIKIKKFKPRDKASPFCG 270
>03_06_0741 +
35893538-35895600,35896274-35896474,35896701-35896814,
35897570-35897649,35897772-35897896,35898008-35898079
Length = 884
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 96 PTRNSKKPTWVRDGRRTPSVVHL 164
PT+++ +PTWV + P+V+ L
Sbjct: 65 PTQHAPEPTWVNPSKPKPTVLSL 87
>02_01_0335 +
2386902-2386906,2386976-2387282,2387664-2387777,
2390252-2390320,2390416-2390715,2390829-2390930,
2391085-2391279,2391377-2391664,2391942-2392128,
2393168-2393272,2393778-2393824,2393982-2394074
Length = 603
Score = 26.6 bits (56), Expect = 7.8
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +2
Query: 86 QRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGK 265
++W E K+ T++ F +HA G+++ G+E +++I K GK
Sbjct: 439 EKWRRAEVPKSDSVTQY----FKNITHANGVIIHPAGLECSL-HASIDALGSCYGDKQGK 493
Query: 266 KVTAFVPR 289
K A+V R
Sbjct: 494 KYRAWVDR 501
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 135 HLVPMWAFLNSLSAHRCSRR*FTCLRAVRI 46
H+V WAFL + C F C+ V++
Sbjct: 577 HIVNSWAFLQPFTLQMCQVLQFACVNEVQL 606
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 154 TEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPRFTHY 26
T ++P H+ + +G S A ++ VLAR ANT + +
Sbjct: 183 TTATKVPGGWHIDGQKRWIGNSTFADVLVVLARNANTKQLNGF 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,722,974
Number of Sequences: 37544
Number of extensions: 282278
Number of successful extensions: 867
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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