Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_O09
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425... 186 8e-48
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315... 175 3e-44
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335... 168 3e-42
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 50 1e-06
09_02_0373 - 8098060-8098229,8098316-8098375,8098486-8098674,809... 33 0.15
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 29 1.9
04_01_0296 + 3927741-3927960,3928257-3928900 28 5.8
>04_03_0871 -
20441689-20441756,20442220-20442349,20442422-20442507,
20444271-20444316,20444425-20444547,20445302-20445370
Length = 173
Score = 186 bits (454), Expect = 8e-48
Identities = 93/137 (67%), Positives = 103/137 (75%)
Frame = +1
Query: 43 RKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVK 222
+K + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVK
Sbjct: 27 KKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 85
Query: 223 ADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXX 402
ADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA AQ
Sbjct: 86 ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 145
Query: 403 MKIGRIEDVTPVPSDST 453
MKIGRIEDVTPVP+DST
Sbjct: 146 MKIGRIEDVTPVPTDST 162
>02_04_0100 -
19730137-19730237,19731215-19731344,19731419-19731504,
19732410-19732455,19732558-19732680,19732779-19732781
Length = 162
Score = 175 bits (425), Expect = 3e-44
Identities = 93/151 (61%), Positives = 103/151 (68%), Gaps = 11/151 (7%)
Frame = +1
Query: 34 MAPRKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 213
M+ RK +E VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSGRKKTREPKEENVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60
Query: 214 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 393
KVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA AQ
Sbjct: 61 KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120
Query: 394 XXXMKIGRI-----------EDVTPVPSDST 453
MKIGRI EDVTPVP+DST
Sbjct: 121 RSGMKIGRIADDVLSIFCHTEDVTPVPTDST 151
>02_01_0469 -
3359156-3359500,3359595-3359680,3359766-3359811,
3359897-3360016,3360622-3360624
Length = 199
Score = 168 bits (408), Expect = 3e-42
Identities = 85/129 (65%), Positives = 94/129 (72%)
Frame = +1
Query: 34 MAPRKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 213
M+ RK + KEE VTLGP GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGM
Sbjct: 1 MSKRKTREPKEE-NVTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 59
Query: 214 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 393
KVKADRDE+SPYAAMLA+QDVA++CK LGITALHIKLRA AQ
Sbjct: 60 KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 119
Query: 394 XXXMKIGRI 420
MKIGRI
Sbjct: 120 RSGMKIGRI 128
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +1
Query: 199 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 291
V GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 199 VTGGMKVKADRDEASPYAAMLAAQDVA 279
V GGM +K+D DE SP+ + + D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192
>09_02_0373 -
8098060-8098229,8098316-8098375,8098486-8098674,
8098994-8099108,8099374-8099427,8099600-8099709,
8099792-8099879,8099969-8100181
Length = 332
Score = 33.1 bits (72), Expect = 0.15
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -1
Query: 282 LSNILCSQHSGVG*SLITISLHFHASGNTGNSFSTGQIGNVHECVIEGGEYVCHPEYY-L 106
L NI+ H VG ++T L + GNT ++ IG V C I GG Y +Y L
Sbjct: 37 LLNIIEPFHRFVGRDMMT-DLRYPLKGNTVPFWAVPLIGIVLPCAIFGGIYFKKKNFYDL 95
Query: 105 THQVLG 88
H +LG
Sbjct: 96 HHGILG 101
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = -3
Query: 121 PRILSHPPSAGDQESPEPPLLQLCFFSGPW 32
PR S +AGD PEPPL L F S W
Sbjct: 10 PRRGSRHAAAGDLRPPEPPLDPLEFLSRSW 39
>04_01_0296 + 3927741-3927960,3928257-3928900
Length = 287
Score = 27.9 bits (59), Expect = 5.8
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -1
Query: 495 KKLQPASSSSTLPAC--GVRRHRGHIFNAANLHAGTSESTESRLGTRSRSLCLVTSSRTE 322
+K + SSSST C V R G + LHA TSES ++ R+ + L+T S +
Sbjct: 215 RKEREGSSSSTPCRCMRQVGRQLGMRPDGPKLHATTSESQAGQVPVRTGGVHLMTYSGGQ 274
Query: 321 LNVQ 310
+Q
Sbjct: 275 PTLQ 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,208,308
Number of Sequences: 37544
Number of extensions: 358227
Number of successful extensions: 1189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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