Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O08
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0233 - 15656930-15656998,15657459-15657591,15657677-156577...    36   0.013
05_01_0019 - 129767-129931,130078-130257,130491-130728,130833-13...    31   0.66 
07_01_0474 + 3579653-3579821,3580407-3580744                           30   1.1  
08_02_1365 - 26423915-26423953,26424409-26424492,26424543-264245...    29   2.6  
02_03_0385 + 18396109-18396294,18396344-18396379                       27   8.1  

>03_03_0233 -
           15656930-15656998,15657459-15657591,15657677-15657729,
           15658640-15658690,15658790-15658859,15659009-15659223,
           15660465-15660570,15660686-15660753,15660861-15661148,
           15661253-15661408,15661450-15661544,15661632-15661788
          Length = 486

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
 Frame = +3

Query: 54  PKSLFVAIFLTCFIHISLSKPTTENDLTEGRGIGSTIWGWI-----TYPFTWWYETGQ 212
           P +L   +FL C +H   +    ++DLT G G GS +WG++      + F W+Y++ Q
Sbjct: 10  PLALLALLFL-CLLHGERAA-AADDDLTSGTGDGSELWGYVQVRPKAHLFWWYYKSPQ 65


>05_01_0019 -
           129767-129931,130078-130257,130491-130728,130833-131236,
           131284-131427,131709-131995,132071-132150,132563-132714,
           132793-132909,133292-133450,133546-133946,134106-134423,
           135050-135095,135203-135310
          Length = 932

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 340 MAVRNLTCNIYDTDLTGICREYNTIK 417
           + VRN+T NI D+DLT + ++Y  I+
Sbjct: 272 LVVRNITANIEDSDLTVLFQQYGDIR 297


>07_01_0474 + 3579653-3579821,3580407-3580744
          Length = 168

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 168 GW-ITYPFTWWYETGQTPVNDQLVQSSTYGPYEVTEI 275
           GW + YP T W +     + D+LV + T G + VTE+
Sbjct: 34  GWTLEYPSTNWADGKSFQIGDKLVFTYTKGKHTVTEV 70


>08_02_1365 -
           26423915-26423953,26424409-26424492,26424543-26424577,
           26425469-26425697
          Length = 128

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 81  LTCFIHISLSKPT-TENDLTEGRGIGSTIWGWITYPFTWWYETGQTPV 221
           + CF+      PT ++    + R     IW W+ +   WW   G+T V
Sbjct: 10  ILCFLLSHRPSPTPSQRRCPDPRMHHLQIWRWLGFGLEWWLAAGRTRV 57


>02_03_0385 + 18396109-18396294,18396344-18396379
          Length = 73

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 12  IRHDAHIRVTMVYYPKSLFVAIFLTCFIHISLSKPTTENDLTEGRGIGSTIWGWITY-PF 188
           + H A   V +VY P S+ V +FL  F+   L K +    +    G  S I G ITY P 
Sbjct: 11  LMHVAAALVVLVYIPLSMPVKLFLWAFVK-PLRKESLRGKVVLITGASSGI-GEITYKPN 68

Query: 189 TWWYE 203
             W +
Sbjct: 69  ASWMQ 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,705,672
Number of Sequences: 37544
Number of extensions: 270926
Number of successful extensions: 529
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)