Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O08
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82075-3|CAB04929.2|  784|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AF293972-1|AAG02478.1|  784|Caenorhabditis elegans auxilin protein.    30   1.0  
AF024493-3|AAB70322.2|  319|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    27   7.3  

>Z82075-3|CAB04929.2|  784|Caenorhabditis elegans Hypothetical
           protein W07A8.3 protein.
          Length = 784

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = +1

Query: 232 LFSHLHMDPMKLLKSANPI*QYRA----TTKHVLLLNVT*MAVRNLTCNIYDTDLTGICR 399
           +F+   MD  K++ SA P+   R      T+ +  LN        L C   D +L G  R
Sbjct: 321 IFTSSEMDVSKMIASAMPVQDLRMIVNFATRRMPTLNTFQFDRYKLLCVRNDRELDGYQR 380

Query: 400 EYNTIKPEEISP 435
            Y  +  E+ SP
Sbjct: 381 SYGDVDSEDESP 392


>AF293972-1|AAG02478.1|  784|Caenorhabditis elegans auxilin protein.
          Length = 784

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
 Frame = +1

Query: 232 LFSHLHMDPMKLLKSANPI*QYRA----TTKHVLLLNVT*MAVRNLTCNIYDTDLTGICR 399
           +F+   MD  K++ SA P+   R      T+ +  LN        L C   D +L G  R
Sbjct: 321 IFTSSEMDVSKMIASAMPVQDLRMIVNFATRRMPTLNTFQFDRYKLLCVRNDRELDGYQR 380

Query: 400 EYNTIKPEEISP 435
            Y  +  E+ SP
Sbjct: 381 SYGDVDSEDESP 392


>AF024493-3|AAB70322.2|  319|Caenorhabditis elegans Hypothetical
           protein F23F1.3 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 9/37 (24%), Positives = 23/37 (62%)
 Frame = +3

Query: 237 QSSTYGPYEVTEIGKPNITVSCNDQTCTTTKCDLNGC 347
           +++   P+++  +G  ++ +  ND+T T ++ D+ GC
Sbjct: 38  KTAKLAPFKLENVGLSDLYIEVNDRTWTLSETDIIGC 74


>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
           protein F26C11.3 protein.
          Length = 1317

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 24/84 (28%), Positives = 39/84 (46%)
 Frame = +3

Query: 102 SLSKPTTENDLTEGRGIGSTIWGWITYPFTWWYETGQTPVNDQLVQSSTYGPYEVTEIGK 281
           S S P+ ++  T     G+T + W T   T    +G+  +++ L+    Y P   T + +
Sbjct: 670 SSSTPSLKHSTTPTPTPGTTTYNWPTGGTTRMLPSGEIILSESLI---AY-PNCTTVLMQ 725

Query: 282 PNITVSCNDQTCTTTKCDLNGCQK 353
              T S N +T T T  D  GC+K
Sbjct: 726 LIYTPSTN-KTRTETTTDTEGCKK 748


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,103,866
Number of Sequences: 27780
Number of extensions: 255871
Number of successful extensions: 622
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)