Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O07
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    27   1.9  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   5.7  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   5.7  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    25   10.0 

>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 379 LLHFVESLLRDYEGVVHGLIEDPLVVMSHMLLLRTCY 269
           LL F+E +  DYE  +H L      + +H+ L    Y
Sbjct: 400 LLKFIEEIRNDYEERIHALESQNSALKAHLRLAVDAY 436


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 399 HCLIMTGVTLMNPVV*QRKRVIISLSRYITAWL 497
           H  I+   T    +V   +R+  S SRY++AWL
Sbjct: 620 HTNIVALQTYAKSIVSTSRRLYASTSRYVSAWL 652


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 80   SDPTAYWTGYFTSRPTTKYFEREANNYLQVVKQLQVLAGLEKHNVY 217
            S P    T + T+      FE+EAN +   +  L  +  ++K N+Y
Sbjct: 1737 SSPPPIHTNFDTNADIITLFEKEANEHPSSI-ALHFVYNVDKENIY 1781


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 197 LEKHNVYVLNELRDAMGVMQHHDAITGTEKQHVTHDYE 310
           ++K   Y+L+ L   +  ++ HD +  T K+ +T DYE
Sbjct: 552 IQKKEYYLLSVL---LATVRDHDGVLQTWKKLITGDYE 586


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 434 SSCLTAETSDNFIVTIYNSLAWQVKTFLEIPVV 532
           SS   AET    I+TI NSL + V  F+  P +
Sbjct: 7   SSVAIAETRRQIILTIINSLVYLV-NFISCPSI 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,519
Number of Sequences: 5004
Number of extensions: 43881
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)