Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O07
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245...   118   4e-27
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937...   111   4e-25
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850           62   3e-10
02_05_0015 - 24992253-24993993,24995331-24995695                       29   3.3  
11_06_0723 - 26688378-26688385,26689351-26689569,26690100-266901...    27   7.7  
05_04_0293 - 19898254-19898819,19899698-19899701                       27   7.7  
02_02_0206 - 7771835-7771913,7772083-7772219,7772364-7772422,777...    27   7.7  

>10_01_0232 +
           2456449-2456652,2456814-2456897,2459113-2459201,
           2459245-2459452,2459764-2459883,2460004-2460087,
           2460171-2460242,2460342-2460455,2460852-2460952,
           2461024-2461117,2461265-2461432,2461539-2461616,
           2461908-2461973,2462052-2462108,2462353-2462572,
           2462867-2463003,2465379-2465450,2465530-2465577,
           2465681-2465806,2465982-2466047,2466508-2466620,
           2467348-2467432,2467885-2467980,2468067-2468114,
           2468190-2468258,2468393-2468581
          Length = 935

 Score =  118 bits (283), Expect = 4e-27
 Identities = 64/184 (34%), Positives = 93/184 (50%), Gaps = 7/184 (3%)
 Frame = +2

Query: 11  YLKAVRDADPVLPTKQDDFFPYASDPTAYWTGYFTSRPTTKYFEREANNYLQVVKQLQVL 190
           Y  A   ++   P K DD+FPYA    AYWTGYFTSRPT K + R  + Y    +QL+ L
Sbjct: 339 YTDAKHASNESWPLKYDDYFPYADAKNAYWTGYFTSRPTFKRYIRMISGYYLAARQLEFL 398

Query: 191 AGLEKHNVYVLNELRDAMGVMQHHDAITGTEKQHVTHDYERIL-------NQAVDDALII 349
            G     ++  + L D +G+ QHHDA++GT KQH T DY + L        + V+ AL  
Sbjct: 399 VGRSSLGLFT-SSLEDPLGIAQHHDAVSGTAKQHTTDDYSKRLAIGVSQVEKGVNTALSC 457

Query: 350 SQQAFNKMKQGKSSKQPLFNYDRCHFNESSCLTAETSDNFIVTIYNSLAWQVKTFLEIPV 529
              +       K S+  L N   C   E    +A+   + ++ +YN L W+   F+ +PV
Sbjct: 458 LTSSKGTCTATKFSQCQLLNISYCPSTEEGISSAK---SLVIVVYNPLGWERSDFVRVPV 514

Query: 530 VKAD 541
             A+
Sbjct: 515 NDAN 518


>11_05_0014 +
           18392622-18392834,18393064-18393147,18393709-18393797,
           18393889-18394063,18394370-18394489,18394591-18394677,
           18394755-18394826,18395166-18395279,18395387-18395487,
           18395576-18395669,18395794-18395961,18396287-18396352,
           18396475-18396531,18396708-18396927,18397015-18397151,
           18397573-18397641,18397722-18397781,18397927-18397998,
           18398171-18398218,18398376-18398495,18398743-18398808,
           18399341-18399453,18399821-18399905,18400246-18400356,
           18400436-18400531,18401075-18401143,18401235-18401453
          Length = 974

 Score =  111 bits (267), Expect = 4e-25
 Identities = 62/170 (36%), Positives = 88/170 (51%)
 Frame = +2

Query: 47  PTKQDDFFPYASDPTAYWTGYFTSRPTTKYFEREANNYLQVVKQLQVLAGLEKHNVYVLN 226
           P K +DFFPYA +P AYWTGYFTSRP  K + R  + Y    +QL+   G    ++   +
Sbjct: 344 PLKTNDFFPYADNPNAYWTGYFTSRPALKRYVRVMSGYYLAARQLEFFKGRSNSDL-TTD 402

Query: 227 ELRDAMGVMQHHDAITGTEKQHVTHDYERILNQAVDDALIISQQAFNKMKQGKSSKQPLF 406
            L DA+ + QHHDA+TGTEKQHV +DY + L+                      ++ PL 
Sbjct: 403 SLADALALAQHHDAVTGTEKQHVANDYAKRLSIGY-------------------TQCPLL 443

Query: 407 NYDRCHFNESSCLTAETSDNFIVTIYNSLAWQVKTFLEIPVVKADYEVYD 556
           N   C  +E   +      + +V +YNSL W+ +  L IPV+     V+D
Sbjct: 444 NITYCPPSE---MDLSQGKSLVVLVYNSLGWKREDVLRIPVISDSIVVHD 490


>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
          Length = 1173

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
 Frame = +2

Query: 38  PVLPTKQDDFFPYASDPTAYWTGYFTSRPTTKYFEREANNYLQVVKQLQ--VLAGLEKHN 211
           P  PT   DFF YA     YW+GY+ SRP  K  +R     L+  + L   VL   +K  
Sbjct: 482 PGFPTLSGDFFTYADRNQDYWSGYYVSRPYFKAVDRVLEQTLRASEILSSFVLGYCQKLQ 541

Query: 212 V--------YVLNELRDAMGVMQHHDAITGTEKQHVTHDYERILNQAVDDALIISQQA 361
                    + L   R  + + QHHD +TGT K HV  DY   ++ ++ D  +   +A
Sbjct: 542 CVKLPISFSHKLTAARRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQLFMSRA 599


>02_05_0015 - 24992253-24993993,24995331-24995695
          Length = 701

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 11  YLKAVRDADPVLPTKQDDFFPYASDPTAYWTG--YFTSRPTTKYFEREANN 157
           + K V + DP+L  KQD    YA   +  W G      R  TK  ERE N+
Sbjct: 320 HAKKVNEMDPLLKPKQD---RYALRTSPQWLGPQIEVIRAATKSIEREVNS 367


>11_06_0723 -
           26688378-26688385,26689351-26689569,26690100-26690106,
           26690194-26690256,26690329-26690400,26690507-26691681,
           26692024-26692626,26692643-26692781
          Length = 761

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +2

Query: 131 KYFEREANNYLQVVKQLQVLAGLEKHNVY 217
           ++ E+E  NYLQ V++L++ AG + H VY
Sbjct: 186 QFGEKECRNYLQDVRKLKLGAG-DAHAVY 213


>05_04_0293 - 19898254-19898819,19899698-19899701
          Length = 189

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 146 EANNYLQVVKQLQVLAGLEKHNVYVLNELRDAMGVMQHH 262
           EANNY+ + KQ+  L G   H   +    R +  ++  H
Sbjct: 21  EANNYIVITKQIYKLTGQTHHLALIQAARRSSFKLLTAH 59


>02_02_0206 -
           7771835-7771913,7772083-7772219,7772364-7772422,
           7772535-7772610,7772717-7772873,7773241-7773329,
           7773648-7773750,7773919-7774013,7774301-7774367,
           7774894-7775066
          Length = 344

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/73 (20%), Positives = 31/73 (42%)
 Frame = +2

Query: 218 VLNELRDAMGVMQHHDAITGTEKQHVTHDYERILNQAVDDALIISQQAFNKMKQGKSSKQ 397
           ++ E+     VM  +D  +   KQ    +  +   + +DD L +     + + +G S  Q
Sbjct: 9   IVREMNGGFEVMSGYDRSSMAPKQQQREEESKWYEEEIDDDLKLCYALNSVLHRGASKYQ 68

Query: 398 PLFNYDRCHFNES 436
            +   D  HF ++
Sbjct: 69  EIALIDTKHFGKA 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,935,864
Number of Sequences: 37544
Number of extensions: 268159
Number of successful extensions: 759
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)