Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O06
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.2  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    25   7.3  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    24   9.7  
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    24   9.7  

>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 195 KSNKCMIPYYIQTRLEL 145
           K+ KC++PY++  RL L
Sbjct: 37  KAPKCLVPYWLSIRLSL 53


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 458 FVSFIETCTLYFSHIYYVFS 399
           F+SF+  C L+ S + ++FS
Sbjct: 89  FLSFLSICFLFISFLNFIFS 108


>SPBC8D2.05c |sfi1||spindle pole body protein
          Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 76 GLNPYRHKDYLR 41
          GLNP RH+ Y+R
Sbjct: 59 GLNPARHRSYIR 70


>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 178 DTVLHTNPFGASSVHAPAATNMAANG 101
           +T   T PFG+ S+     TN+ A G
Sbjct: 27  NTTKPTAPFGSGSIFGSTNTNVGAGG 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,598,607
Number of Sequences: 5004
Number of extensions: 26538
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)