Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O06
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0021 + 8118819-8119118                                           28   3.1  
03_05_0173 + 21502765-21504216                                         27   7.3  
02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875           27   7.3  
06_03_1231 + 28580006-28580934,28581810-28582086                       27   9.6  

>10_05_0021 + 8118819-8119118
          Length = 99

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 156 RLELAASTPQRQPTWRPTDADPRETQW 76
           R+  A +  QR+P W P D DP    W
Sbjct: 34  RVAAAVAARQRRPWWAPPDLDPLGQIW 60


>03_05_0173 + 21502765-21504216
          Length = 483

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 206 TIKLNQINA*YRITYKPVWS*QRPRPSGNQHGGQRMQTHAKRNG 75
           T   NQ +   R   +PV +   P P+GNQ  GQR     +R G
Sbjct: 330 TTNSNQNSGGGRTGPQPVAAGAAPNPAGNQQQGQRKGGANRRGG 373


>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
          Length = 356

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 168 YIQTRLELAASTPQRQPTWRPTDADP-RETQWD 73
           Y+    EL   T Q+ P  RP++ DP R   W+
Sbjct: 167 YVGNFHELQKHTQQKHPNSRPSEIDPARRVDWE 199


>06_03_1231 + 28580006-28580934,28581810-28582086
          Length = 401

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 150 ELAASTPQRQPTWRPTDADP-RETQWD 73
           EL   T Q+ P  RP++ DP R+  W+
Sbjct: 149 ELQKHTQQKHPDSRPSEIDPARQVDWE 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,712,256
Number of Sequences: 37544
Number of extensions: 164787
Number of successful extensions: 458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)