Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_O06
(460 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC142684-1|AAI42685.1| 907|Homo sapiens deafness, autosomal rec... 30 3.3
BC142614-1|AAI42615.1| 907|Homo sapiens deafness, autosomal rec... 30 3.3
AL138895-4|CAI17247.1| 345|Homo sapiens deafness, autosomal rec... 30 3.3
AL138895-3|CAI17246.1| 907|Homo sapiens deafness, autosomal rec... 30 3.3
AK056190-1|BAB71117.1| 345|Homo sapiens protein ( Homo sapiens ... 30 3.3
AB040959-1|BAA96050.1| 963|Homo sapiens KIAA1526 protein protein. 30 3.3
L41147-1|AAA92622.1| 440|Homo sapiens 5-HT6 serotonin receptor ... 29 7.7
BC074996-1|AAH74996.1| 440|Homo sapiens 5-hydroxytryptamine (se... 29 7.7
BC074995-1|AAH74995.1| 440|Homo sapiens 5-hydroxytryptamine (se... 29 7.7
AY429105-1|AAR07900.1| 440|Homo sapiens 5-hydroxytryptamine/ser... 29 7.7
AL031727-13|CAI19020.1| 440|Homo sapiens 5-hydroxytryptamine (s... 29 7.7
AK128318-1|BAC87382.1| 421|Homo sapiens protein ( Homo sapiens ... 29 7.7
>BC142684-1|AAI42685.1| 907|Homo sapiens deafness, autosomal
recessive 31 protein.
Length = 907
Score = 30.3 bits (65), Expect = 3.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 195 KSNKCMIPYYIQTRLELAASTPQRQPTW-RPTDADPRETQ 79
+S++ + Y L L A+TP RQP W P A P E +
Sbjct: 100 RSDQLLFDQYTAEGLYLPATTPYRQPAWGGPDSAGPGEVR 139
>BC142614-1|AAI42615.1| 907|Homo sapiens deafness, autosomal
recessive 31 protein.
Length = 907
Score = 30.3 bits (65), Expect = 3.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 195 KSNKCMIPYYIQTRLELAASTPQRQPTW-RPTDADPRETQ 79
+S++ + Y L L A+TP RQP W P A P E +
Sbjct: 100 RSDQLLFDQYTAEGLYLPATTPYRQPAWGGPDSAGPGEVR 139
>AL138895-4|CAI17247.1| 345|Homo sapiens deafness, autosomal
recessive 31 protein.
Length = 345
Score = 30.3 bits (65), Expect = 3.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 195 KSNKCMIPYYIQTRLELAASTPQRQPTW-RPTDADPRETQ 79
+S++ + Y L L A+TP RQP W P A P E +
Sbjct: 100 RSDQLLFDQYTAEGLYLPATTPYRQPAWGGPDSAGPGEVR 139
>AL138895-3|CAI17246.1| 907|Homo sapiens deafness, autosomal
recessive 31 protein.
Length = 907
Score = 30.3 bits (65), Expect = 3.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 195 KSNKCMIPYYIQTRLELAASTPQRQPTW-RPTDADPRETQ 79
+S++ + Y L L A+TP RQP W P A P E +
Sbjct: 100 RSDQLLFDQYTAEGLYLPATTPYRQPAWGGPDSAGPGEVR 139
>AK056190-1|BAB71117.1| 345|Homo sapiens protein ( Homo sapiens
cDNA FLJ31628 fis, clone NT2RI2003344, weakly similar to
PRESYNAPTIC PROTEIN SAP97. ).
Length = 345
Score = 30.3 bits (65), Expect = 3.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 195 KSNKCMIPYYIQTRLELAASTPQRQPTW-RPTDADPRETQ 79
+S++ + Y L L A+TP RQP W P A P E +
Sbjct: 100 RSDQLLFDQYTAEGLYLPATTPYRQPAWGGPDSAGPGEVR 139
>AB040959-1|BAA96050.1| 963|Homo sapiens KIAA1526 protein protein.
Length = 963
Score = 30.3 bits (65), Expect = 3.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 195 KSNKCMIPYYIQTRLELAASTPQRQPTW-RPTDADPRETQ 79
+S++ + Y L L A+TP RQP W P A P E +
Sbjct: 156 RSDQLLFDQYTAEGLYLPATTPYRQPAWGGPDSAGPGEVR 195
>L41147-1|AAA92622.1| 440|Homo sapiens 5-HT6 serotonin receptor
protein.
Length = 440
Score = 29.1 bits (62), Expect = 7.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 72 SPIAFRVGLHPLAAMLVAAGAWTLLAPNGFV 164
SP+ +++ + PL A+ + GAW+L A F+
Sbjct: 130 SPLRYKLRMTPLRALALVLGAWSLAALASFL 160
>BC074996-1|AAH74996.1| 440|Homo sapiens 5-hydroxytryptamine
(serotonin) receptor 6 protein.
Length = 440
Score = 29.1 bits (62), Expect = 7.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 72 SPIAFRVGLHPLAAMLVAAGAWTLLAPNGFV 164
SP+ +++ + PL A+ + GAW+L A F+
Sbjct: 130 SPLRYKLRMTPLRALALVLGAWSLAALASFL 160
>BC074995-1|AAH74995.1| 440|Homo sapiens 5-hydroxytryptamine
(serotonin) receptor 6 protein.
Length = 440
Score = 29.1 bits (62), Expect = 7.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 72 SPIAFRVGLHPLAAMLVAAGAWTLLAPNGFV 164
SP+ +++ + PL A+ + GAW+L A F+
Sbjct: 130 SPLRYKLRMTPLRALALVLGAWSLAALASFL 160
>AY429105-1|AAR07900.1| 440|Homo sapiens
5-hydroxytryptamine/serotonin receptor 6 protein.
Length = 440
Score = 29.1 bits (62), Expect = 7.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 72 SPIAFRVGLHPLAAMLVAAGAWTLLAPNGFV 164
SP+ +++ + PL A+ + GAW+L A F+
Sbjct: 130 SPLRYKLRMTPLRALALVLGAWSLAALASFL 160
>AL031727-13|CAI19020.1| 440|Homo sapiens 5-hydroxytryptamine
(serotonin) receptor 6 protein.
Length = 440
Score = 29.1 bits (62), Expect = 7.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 72 SPIAFRVGLHPLAAMLVAAGAWTLLAPNGFV 164
SP+ +++ + PL A+ + GAW+L A F+
Sbjct: 130 SPLRYKLRMTPLRALALVLGAWSLAALASFL 160
>AK128318-1|BAC87382.1| 421|Homo sapiens protein ( Homo sapiens
cDNA FLJ46459 fis, clone THYMU3020970. ).
Length = 421
Score = 29.1 bits (62), Expect = 7.7
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +1
Query: 76 PLRFAW-VCIRWPPCWLPLG 132
PL W V IRW P W+PLG
Sbjct: 249 PLSQTWSVGIRWGPSWMPLG 268
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,371,479
Number of Sequences: 237096
Number of extensions: 897218
Number of successful extensions: 2008
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2008
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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