Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O06
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical
           protein W03F11.1 protein.
          Length = 235

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 132 PQRQPTWRPTDADPRETQ 79
           P  QPTWRPT   P E +
Sbjct: 217 PTYQPTWRPTAYPPNEVK 234


>Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical
           protein H12I19.1 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -1

Query: 460 VSFPLLKRVLYIFHIYIMSFLIYYNKCQSKKN 365
           V + L+  +L++F+I +  F +Y NK   +++
Sbjct: 25  VLYVLIFIILFLFYILVFPFYVYVNKVNKERD 56


>Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical
           protein F17C11.10 protein.
          Length = 1101

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 287 IFIFNMNKTENSNSKPLSNR 228
           I +FN+ K ++SN KP+SN+
Sbjct: 317 ICLFNVFKDDSSNEKPVSNK 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,760,104
Number of Sequences: 27780
Number of extensions: 150523
Number of successful extensions: 365
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)