Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_O05
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 227 1e-60
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 226 1e-60
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 217 1e-57
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13... 30 0.26
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 29 0.61
SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr ... 27 1.9
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 27 1.9
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 3.2
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 3.2
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 4.3
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1... 25 5.7
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 9.9
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 9.9
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 9.9
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 227 bits (554), Expect = 1e-60
Identities = 106/175 (60%), Positives = 128/175 (73%)
Frame = +2
Query: 29 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 208
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK++++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 209 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 388
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 389 XXFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITK 553
LKPGRKYC VGRLS EVGWKY D+V KLE++RKVK+ Y+ KL K K
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSAAF--YQAKLAKQKK 178
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 226 bits (553), Expect = 1e-60
Identities = 106/175 (60%), Positives = 128/175 (73%)
Frame = +2
Query: 29 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 208
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK++++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 209 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 388
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 389 XXFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITK 553
LKPGRKYC VGRLS EVGWKY D+V KLE++RKVK+ Y+ KL K K
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAF--YQAKLAKQKK 178
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 217 bits (529), Expect = 1e-57
Identities = 94/160 (58%), Positives = 121/160 (75%)
Frame = +2
Query: 29 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 208
K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRNKLK++++LRK C
Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 209 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 388
NP+RG FHFRAPS+I K VRGM+PHKT RG AL+ L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125
Query: 389 XXFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKA 508
LKP RKYC +GRLS EVGWKY+++V KLE++RK+K+
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165
>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
L13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 29.9 bits (64), Expect = 0.26
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +2
Query: 104 GNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVN--PARGPFHFRAPSKILWKTVRGM 277
G+ VVV C +I ISG N K+ S + ++ R +L + V GM
Sbjct: 52 GDVVVVTDCSEIGISGRKLENH-KYYSHSGQPGHLKEWTMEEMAAKRGHKDLLRRAVGGM 110
Query: 278 IPHKTERGKNALRRLRTYDGCPPPF 352
+P + + ++RL YDG P+
Sbjct: 111 LP-RNKLWDRRMKRLYIYDGAEHPY 134
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.61
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 56 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 160
H L + AV K++ G K VV+RC+ I + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191
>SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 80
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 97 QDLSNYCGQSTEQVPAPVDYYGLITKARHFLV 2
QD+S CGQ+ E + + G T ARH LV
Sbjct: 23 QDMSGGCGQNFEVIIVSPLFEGKSTLARHRLV 54
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 198 LLRRNDINFNLFLKKLPEMLICSQRT 121
+L NDIN N L KLP ++ ++RT
Sbjct: 37 VLANNDINENTVLLKLPPNILINKRT 62
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +2
Query: 434 RLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKE 556
R S E K D K E+KR+ K K E+K KK KE
Sbjct: 428 RKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKE 468
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 169 FVPEEIAGNVNLFTTNDHNFVSFQQDLSNYCGQSTEQV 56
F +I GNV LF+T+ H QQ L+ + E V
Sbjct: 392 FELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAV 429
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 4.3
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = -2
Query: 462 YFHPTS-CERRPT*QYLRPGFRQNTRSAA--GTTTRRLLSNGGGQP 334
YF P C R P Y PGF + + AA G T S G+P
Sbjct: 219 YFTPGKHCPRLPVRVYTTPGFSEQGKFAAELGAKTLDFFSGVFGEP 264
>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -1
Query: 154 IAGNVNLFTTNDHNFVSFQQDLSNYCGQSTEQVPAP 47
+A NV+ F++ + V+ ++ Y G++ +QVP P
Sbjct: 1 MASNVDKFSSRFYLNVNKEELKKEYVGKTIQQVPTP 36
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 164 NKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 280
N+ + MS KRC RG HF + L+ ++ ++
Sbjct: 1323 NRTRQMSVYGKRCCNKSCRGSVHFEYNDEQLYNQIKFLL 1361
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 101 EGNKVVVVRCEQINISGNFFRNKLKFMSFL 190
E +V++ CE + +FF KLK+ +
Sbjct: 80 ERKVLVLIHCESLQSFDSFFAQKLKYADLI 109
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 457 PSDFVRETSHMTVFTARLQTEYT 389
PSDF+R S +V T+ L+T T
Sbjct: 631 PSDFIRLNSEESVGTSSLRTSQT 653
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,898
Number of Sequences: 5004
Number of extensions: 53021
Number of successful extensions: 164
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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