Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_O05
(556 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0071 - 522920-523063,524125-524212,524289-524677 209 1e-54
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 208 2e-54
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 113 7e-26
11_04_0056 + 12942802-12942920,12943022-12943115 61 5e-10
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 38 0.007
05_05_0082 + 22252993-22255617 29 2.5
11_06_0432 + 23448482-23448570,23448987-23449100,23449514-234495... 29 3.3
04_01_0112 + 1151242-1151272,1151722-1151928,1151996-1152318,115... 29 3.3
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 28 4.4
05_03_0238 - 10783451-10783735,10784686-10785762 28 5.8
02_02_0350 + 9239138-9240218,9240755-9240906,9241392-9241457,924... 27 7.6
01_07_0004 - 40354253-40354353,40354598-40354670,40356196-403563... 27 7.6
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 209 bits (510), Expect = 1e-54
Identities = 94/180 (52%), Positives = 127/180 (70%)
Frame = +2
Query: 14 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLR 193
+G + +V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG R K+K++ FLR
Sbjct: 5 SGLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLR 64
Query: 194 KRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXX 373
KR N P+ GP HFRAPS+I W+TVRGMIPHKT RG+ AL L+ +DG PPP+D
Sbjct: 65 KRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRTKRMV 124
Query: 374 XXXXXXXFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITK 553
L+PG KYC +G+LS EVGW Y D +R+LE+KRK KA ++YER+ K++T+
Sbjct: 125 VPDALKVLRLQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKA--KVAYERR-KQLTR 181
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 208 bits (508), Expect = 2e-54
Identities = 95/180 (52%), Positives = 128/180 (71%)
Frame = +2
Query: 14 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLR 193
+G +V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG R K+K++ FLR
Sbjct: 5 SGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLR 64
Query: 194 KRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXX 373
KR N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+G PPP+D
Sbjct: 65 KRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRTKRMV 124
Query: 374 XXXXXXXFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITK 553
L+PG KYC +G+LS EVGW Y D +R+LE+KRK KA ++Y+R+ K++ K
Sbjct: 125 IPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKA--KVAYDRR-KQLAK 181
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 113 bits (273), Expect = 7e-26
Identities = 48/92 (52%), Positives = 61/92 (66%)
Frame = +2
Query: 203 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXX 382
N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPD 61
Query: 383 XXXXFCLKPGRKYCHVGRLSHEVGWKYRDVVR 478
L+PG KYC +G+LS EVGW Y D +R
Sbjct: 62 ALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 61.3 bits (142), Expect = 5e-10
Identities = 26/56 (46%), Positives = 33/56 (58%)
Frame = +2
Query: 296 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRKYCHVGRLSHEVGWKY 463
RG+ AL RL+ Y+G PPP+D L+PG KYC +G+LS EVGW Y
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 37.5 bits (83), Expect = 0.007
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Frame = +2
Query: 38 VIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFRNKLKFM 181
V+D +LGRLA+ IA + N+ VVVV E++ +SG KL
Sbjct: 541 VVDATDKILGRLASTIAVHIRGKNEATYTPSVDMGAFVVVVNAEKVAVSGKKRSQKLYRR 600
Query: 182 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 355
R R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 601 HSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLP-KGRLGRRLFTHLKVYKGAEHPHE 657
>05_05_0082 + 22252993-22255617
Length = 874
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2
Query: 455 WKYRDVVRKLEDKRKVK 505
WK RD VRKL D RKVK
Sbjct: 721 WKERDEVRKLMDYRKVK 737
>11_06_0432 +
23448482-23448570,23448987-23449100,23449514-23449580,
23449614-23449741,23452786-23453071,23453264-23453414,
23453603-23453799
Length = 343
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -1
Query: 181 HKLQFVPEEIAGNVNLFTTNDHNFVSFQQDLSNYCGQSTEQVPAPVDYYGLITK---ARH 11
H++ V E+ +V F DH+ + L N+C + + VD G +TK + H
Sbjct: 69 HEIAGVVTEVGADVKGFKVGDHDCENCNSSLENHCSKCVVTYNS-VDSDGTVTKGGYSSH 127
Query: 10 FLV 2
LV
Sbjct: 128 ILV 130
>04_01_0112 +
1151242-1151272,1151722-1151928,1151996-1152318,
1152552-1153793
Length = 600
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +3
Query: 120 SFVVNRLTFPAISSGTN*SLCHSFVKDVMSTQPVDLFTSELHQKSSGRPSEE*SHIRLSV 299
+ V+NR T + G N L S++ ++ S + VDL + LH + + ++ L V
Sbjct: 35 ALVINRTTLSELYLGGNQLLTTSWISNLTSLRVVDLSQNFLHGYNGICNLHQLEYLHLGV 94
Query: 300 GRMH 311
+H
Sbjct: 95 NMLH 98
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +2
Query: 203 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 349
NV R P FR P+K + +T R I R ++T PPP
Sbjct: 652 NVRANRVPESFRKPNKGIQETARSQISSSKSATPAQTRSIKTRAPNPPP 700
>05_03_0238 - 10783451-10783735,10784686-10785762
Length = 453
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 434 RLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITK 553
+L +E+ RD+ ++ EDK IK+ + E K K+ K
Sbjct: 177 KLGNEIDKTRRDITKQFEDKGNKLEIKMKALEGKTDKLDK 216
>02_02_0350 +
9239138-9240218,9240755-9240906,9241392-9241457,
9242715-9242951
Length = 511
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 177 NFNLFLKKLPEM-LICSQRTTTTLFPSSRTLAITAASRPSKCPRPSITM 34
NF++ L + +IC+Q T FP+ +L I S+ S P P TM
Sbjct: 212 NFSVLLLPFSKCSVICTQDINTVWFPNLCSLEIRNCSKLSLPPMPHNTM 260
>01_07_0004 -
40354253-40354353,40354598-40354670,40356196-40356319,
40357821-40358222,40358704-40358732
Length = 242
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 105 PSSRTLAITAASRPSKCPRPSITMALLLKP 16
P RT + A + PS CP + ALLL P
Sbjct: 141 PPIRTPVLPAHALPSSCPLEPLEFALLLLP 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,513,289
Number of Sequences: 37544
Number of extensions: 371467
Number of successful extensions: 996
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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