Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_O04
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc... 275 3e-75
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 27 1.5
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 27 2.6
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 2.6
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 26 3.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.5
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 26 4.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 4.5
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 25 6.0
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 25 6.0
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos... 25 6.0
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 7.9
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 25 7.9
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ... 25 7.9
>SPCC1919.09 |tif6||translation initiation factor
eIF6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 275 bits (675), Expect = 3e-75
Identities = 122/158 (77%), Positives = 148/158 (93%)
Frame = +3
Query: 15 NKNGLLVPSSTTDTELQHIRNSLPDAVKVQRVEERLSALGNVIACNDYVALVHPDLDKDT 194
N+ GLLVPSSTTD ELQH+RNSLPD VK+QRV+ERLSALGN++ACNDYVALVHPD++++T
Sbjct: 66 NRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPDIERET 125
Query: 195 EEILADTLNVEVFRQTIAGNVLVGSYAALTNRGGLVHPKTTIQDQDELSSLLQVPLVAGT 374
EEI+AD L+VEVFRQT+AGNVL GSY AL+N+G LVHP+T+IQ+QDELSSLLQVPLVAGT
Sbjct: 126 EEIIADVLDVEVFRQTVAGNVLTGSYCALSNQGALVHPRTSIQEQDELSSLLQVPLVAGT 185
Query: 375 VNRGSEVVAAGMVVNDWCAFCGLDTTSTEISVIESVFK 488
+NRGS+V+ AG+VVNDWCAF GLDTT+TE++V ES+FK
Sbjct: 186 INRGSDVIGAGLVVNDWCAFAGLDTTATELAVCESIFK 223
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 39 SSTTDTELQHIRNSLPDAVKVQRVEERLSALGNVIACNDYVALVHP 176
SST ++ I S+ + +V +R S G V +C+D+ LVHP
Sbjct: 145 SSTISSDACFIA-SIETKNPLAKVWQRTSPQGTVSSCDDFSYLVHP 189
>SPCC1442.09 |trp3||anthranilate synthase component
I|Schizosaccharomyces pombe|chr 3|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 306 PKTTIQDQDELSSLLQVPLVAGTVNRGSEVVAAGMVVNDWCAFCGLDTTSTE 461
P+ +++DE + L+A +R V+ + ND C LDTTS +
Sbjct: 300 PRGKTKEEDEAYAK---DLLASVKDRAEHVMLVDLARNDVSRVCDLDTTSVD 348
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -3
Query: 484 NTLSITEISV-DVVSRPQNAHQSLTTMPAATTSL-PLFTVPAT 362
+T S+T ++ +V P +H S TT TTS+ TVP T
Sbjct: 57 STHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPT 99
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 26.2 bits (55), Expect = 3.4
Identities = 18/74 (24%), Positives = 35/74 (47%)
Frame = +3
Query: 150 NDYVALVHPDLDKDTEEILADTLNVEVFRQTIAGNVLVGSYAALTNRGGLVHPKTTIQDQ 329
N + L P+ + +++A T + +GN+L+ +L + ++ P + D
Sbjct: 186 NGEIILRDPNSFQPVNKVVAHTGTISDI--DTSGNLLLSCGYSLRHGTYMLDPFVKVWDL 243
Query: 330 DELSSLLQVPLVAG 371
LSSL+ +P AG
Sbjct: 244 RNLSSLVPIPFPAG 257
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 4.5
Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 4/132 (3%)
Frame = -3
Query: 469 TEISVDVVSRPQNAHQSLTTMPAATTSLPLFTVPATNGTXXXXXXXXXSCIVVLG---CT 299
T SV S P + TT +TS+P + P T+ + I +
Sbjct: 429 TSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTS 488
Query: 298 KPPRLVNAA*DPTRTFPAI-VCRNTSTFNVSARISSVSLSKSG*TRAT*SLHAMTLPKAL 122
P N + + + V + T + S ++S ++ + T +T L+ T +
Sbjct: 489 TPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTST 548
Query: 121 RRSSTRCTFTAS 86
++T CT + S
Sbjct: 549 PLATTNCTTSTS 560
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 25.8 bits (54), Expect = 4.5
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -3
Query: 493 LVLNTLSITEISVDVVSR--PQNAHQSLTTMPAATTSLPLFTVPATNG 356
L++ S ++ VD V P+ A + L P T+ P+F+ PATNG
Sbjct: 197 LIVGVKSEQKLKVDFVDVEFPEPA-EGLPGTPKPTSLHPVFSNPATNG 243
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.8 bits (54), Expect = 4.5
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 31 WSHLQPQTQNYN 66
WSHLQP NYN
Sbjct: 838 WSHLQPLPYNYN 849
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 255 HSPQLFAGTLQHLMCQ 208
H P LFA +QHL C+
Sbjct: 509 HLPPLFASLMQHLSCR 524
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 6.0
Identities = 18/94 (19%), Positives = 44/94 (46%)
Frame = +3
Query: 81 LPDAVKVQRVEERLSALGNVIACNDYVALVHPDLDKDTEEILADTLNVEVFRQTIAGNVL 260
L +A+K +V + + +++ N +LVH + ++ + L ++ + + + + L
Sbjct: 662 LREAIKDVQVGDMSDFISDLLKQNFLESLVHGNYTEEDAKNLIESAQKLIDPKPVFASQL 721
Query: 261 VGSYAALTNRGGLVHPKTTIQDQDELSSLLQVPL 362
A + GG KT + +++E +S + L
Sbjct: 722 SRKRAIIVPEGGNYIYKTVVPNKEEKNSAIMYNL 755
>SPBC21.07c |ppk24||serine/threonine protein kinase
Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 31 WSHLQPQTQNYNILEIVCP 87
WS +QP+ + NIL+++CP
Sbjct: 176 WS-IQPKLDHPNILKVICP 193
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 7.9
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -3
Query: 232 NTSTFNVSARISSVSLSKSG*TRAT*SLHAMTLPKALRRSSTRCTFTASGKLFLICCNSV 53
NTS+F S+ ISS SLS S T + + + P + SS+ +FT S L S
Sbjct: 224 NTSSFLPSSVISSASLSSSS-VLPTSIITSTSTPVTV-SSSSLSSFTPSYSTNLTTTGST 281
Query: 52 SVVEDGT--RSPF 20
+ T SPF
Sbjct: 282 TTTGSATVSSSPF 294
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 7.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 242 NCGECPRRILCCVDQPRRFGA 304
NCG ++ C+++PR+ GA
Sbjct: 115 NCGAMSHKVKDCMERPRKRGA 135
>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.0 bits (52), Expect = 7.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 330 PDLVLLF*GAPNLRGWSTQHKI 265
PDL LF G ++ WST+ +I
Sbjct: 30 PDLAALFRGVEIIQAWSTRGRI 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,210
Number of Sequences: 5004
Number of extensions: 44258
Number of successful extensions: 139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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