Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_O04
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1443 + 26575172-26575181,26575709-26575805,26575900-265759... 272 1e-73
01_01_1232 - 9966448-9966708,9966818-9966928,9967142-9967176,996... 166 1e-41
10_08_0415 - 17761594-17762382 28 4.6
04_03_0824 + 20086639-20087263,20087282-20087463,20087569-200877... 28 6.1
03_06_0098 + 31641760-31642386,31643173-31644114 28 6.1
02_05_0121 + 26015578-26015613,26015734-26016066,26016184-26016978 28 6.1
10_08_0467 - 18143358-18143540,18144520-18144597,18144624-18145364 27 8.0
04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859 27 8.0
02_04_0404 + 22626709-22628601 27 8.0
>07_03_1443 +
26575172-26575181,26575709-26575805,26575900-26575985,
26576073-26576117,26576788-26576918,26577016-26577126,
26577215-26577472
Length = 245
Score = 272 bits (667), Expect = 1e-73
Identities = 126/162 (77%), Positives = 144/162 (88%)
Frame = +3
Query: 9 VANKNGLLVPSSTTDTELQHIRNSLPDAVKVQRVEERLSALGNVIACNDYVALVHPDLDK 188
V NKNGLL+P +TTD ELQH+RN LPD V VQR++ERLSALGN +ACND+VAL HPDLDK
Sbjct: 64 VGNKNGLLLPHTTTDQELQHLRNCLPDQVVVQRIDERLSALGNCVACNDHVALTHPDLDK 123
Query: 189 DTEEILADTLNVEVFRQTIAGNVLVGSYAALTNRGGLVHPKTTIQDQDELSSLLQVPLVA 368
TEE++AD L VEVFRQTIAGN+LVGSY A+TNRGGLVHP T+I+D DELS+LLQVPLVA
Sbjct: 124 ATEELIADVLGVEVFRQTIAGNILVGSYCAITNRGGLVHPHTSIEDLDELSTLLQVPLVA 183
Query: 369 GTVNRGSEVVAAGMVVNDWCAFCGLDTTSTEISVIESVFKTK 494
GTVNRGSEV+AAGM VNDW AFCG DTT+TE+SVIESVFK +
Sbjct: 184 GTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLR 225
>01_01_1232 -
9966448-9966708,9966818-9966928,9967142-9967176,
9967469-9967599,9967683-9967779,9967907-9967916
Length = 214
Score = 166 bits (404), Expect = 1e-41
Identities = 73/104 (70%), Positives = 93/104 (89%)
Frame = +3
Query: 183 DKDTEEILADTLNVEVFRQTIAGNVLVGSYAALTNRGGLVHPKTTIQDQDELSSLLQVPL 362
D+ TEEI++D L VEVFRQTIAGN+LVGS+ A +N+GGLVHP+T+++DQ ELS+LL+VPL
Sbjct: 90 DQGTEEIISDVLGVEVFRQTIAGNILVGSFCAFSNKGGLVHPQTSVEDQAELSTLLEVPL 149
Query: 363 VAGTVNRGSEVVAAGMVVNDWCAFCGLDTTSTEISVIESVFKTK 494
AG++NRGSEVVAAGM VNDW AFCG DTT+TE+SV+ESVF+ +
Sbjct: 150 AAGSINRGSEVVAAGMAVNDWAAFCGADTTATELSVVESVFRLR 193
Score = 52.8 bits (121), Expect = 2e-07
Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 13/129 (10%)
Frame = +3
Query: 9 VANKNGLLVPSSTTDTELQHIRNSLPDAVKVQRVEE-------RLSALGNVI-----ACN 152
V NKNGLL+P +TTD ELQH++NSLPD + + + R + GN++ A +
Sbjct: 64 VGNKNGLLLPHTTTDQELQHLKNSLPDQGTEEIISDVLGVEVFRQTIAGNILVGSFCAFS 123
Query: 153 DYVALVHPDLDKDTEEILADTLNVEVFRQTI-AGNVLVGSYAALTNRGGLVHPKTTIQDQ 329
+ LVHP + + L+ L V + +I G+ +V + A+ + TT +
Sbjct: 124 NKGGLVHPQTSVEDQAELSTLLEVPLAAGSINRGSEVVAAGMAVNDWAAFCGADTTATEL 183
Query: 330 DELSSLLQV 356
+ S+ ++
Sbjct: 184 SVVESVFRL 192
>10_08_0415 - 17761594-17762382
Length = 262
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 306 GAPNLRGWSTQHKILRGHSPQLFAG 232
GAP L GW HK L G + + AG
Sbjct: 204 GAPTLLGWFISHKELHGETVKTAAG 228
>04_03_0824 +
20086639-20087263,20087282-20087463,20087569-20087724,
20087867-20087989,20088079-20088247,20088384-20088466,
20088641-20088742,20089246-20089359,20089735-20089811,
20089884-20089962,20090060-20090128,20090235-20090410,
20090460-20090561,20090678-20090768,20090878-20090976,
20091141-20091326
Length = 810
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 234 RQTIAGNVLVGSYAALTNRGGLVHPKTTIQDQDELSSLLQV 356
R + A ++G A ++ GLVHP T Q +SS QV
Sbjct: 73 RPSAAAAAVLGEPVAASDDHGLVHPSTDFASQALVSSTQQV 113
>03_06_0098 + 31641760-31642386,31643173-31644114
Length = 522
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/59 (22%), Positives = 34/59 (57%)
Frame = +3
Query: 51 DTELQHIRNSLPDAVKVQRVEERLSALGNVIACNDYVALVHPDLDKDTEEILADTLNVE 227
D + + I+ S+P +++ +V E L V++C +Y+ V P + ++ E +++ +++
Sbjct: 191 DAKQRLIKQSVPRVLRILKVAELLGFQACVLSCLEYLEAV-PWVGEEEENVVSSVQHLQ 248
>02_05_0121 + 26015578-26015613,26015734-26016066,26016184-26016978
Length = 387
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 407 ACSNYFTTSIHSTCHQRYLK*RRE 336
ACS F +S+HS H++ L+ RR+
Sbjct: 347 ACSPTFVSSLHSNSHRKVLEMRRK 370
>10_08_0467 - 18143358-18143540,18144520-18144597,18144624-18145364
Length = 333
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 436 QNAHQSLTTMPAATTSLPLF 377
Q HQ+LTT PAAT + +F
Sbjct: 159 QEHHQTLTTRPAATDEMQIF 178
>04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859
Length = 429
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 407 ACSNYFTTSIHSTCHQRYLK*RRE 336
ACS F ++IHS H++ L+ RR+
Sbjct: 385 ACSPTFVSAIHSNSHRKVLEMRRK 408
>02_04_0404 + 22626709-22628601
Length = 630
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 270 YAALTNRGGLVHPKTTIQDQDELSSLLQVPLVA 368
Y AL RGG+ TT+ DEL+ V +++
Sbjct: 336 YVALAERGGVASTATTLPSLDELADATGVKMLS 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,268,899
Number of Sequences: 37544
Number of extensions: 292514
Number of successful extensions: 688
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -