Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O04
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99709-5|CAB16860.1|  246|Caenorhabditis elegans Hypothetical pr...   221   2e-58
Z82084-2|CAB04976.1|  536|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical ...    27   7.2  
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    27   7.2  

>Z99709-5|CAB16860.1|  246|Caenorhabditis elegans Hypothetical
           protein C47B2.5 protein.
          Length = 246

 Score =  221 bits (541), Expect = 2e-58
 Identities = 101/160 (63%), Positives = 133/160 (83%)
 Frame = +3

Query: 9   VANKNGLLVPSSTTDTELQHIRNSLPDAVKVQRVEERLSALGNVIACNDYVALVHPDLDK 188
           V N++GLLVP++TTD ELQH+RNSLPD V ++RV+ERLSALGNVIACND+VA+VH ++  
Sbjct: 64  VGNRHGLLVPNATTDQELQHLRNSLPDEVAIRRVDERLSALGNVIACNDHVAIVHAEISA 123

Query: 189 DTEEILADTLNVEVFRQTIAGNVLVGSYAALTNRGGLVHPKTTIQDQDELSSLLQVPLVA 368
           +TE+ L + L VEVFR ++A N LVGSY  L++ G LV  +T  + Q E+++LLQ+P+VA
Sbjct: 124 ETEQALVEVLKVEVFRVSLAQNSLVGSYCILSSNGCLVAARTPPETQREIAALLQIPVVA 183

Query: 369 GTVNRGSEVVAAGMVVNDWCAFCGLDTTSTEISVIESVFK 488
           GT NRGSE++ AGMVVNDW AFCGLD+TSTE+SV+ES+FK
Sbjct: 184 GTCNRGSELIGAGMVVNDWVAFCGLDSTSTELSVVESIFK 223


>Z82084-2|CAB04976.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK1053.2 protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +3

Query: 21  NGLLVPSSTTDTELQHIRNSLPDAVKVQRVEERLSALGN 137
           NG+LV S+ T++  Q IR  +PD VK      R+S +G+
Sbjct: 172 NGILVNSNLTNSNNQSIRMVIPDLVKAINT-SRVSLVGS 209


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical
           protein F52B5.3 protein.
          Length = 1425

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 27  LLVPSSTTDTELQHIRNSLPDAVKVQRVEERLSALGNVI 143
           ++ P S    ELQ +RNSLP +    +V + +S+   VI
Sbjct: 163 VIPPKSKCSKELQKVRNSLPASKYCDQVLKSISSCNVVI 201


>AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical
           protein Y39C12A.8 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 81  LPDAVKVQRVEERLSALGNVIACNDYVALVHPDLDKDTEEI 203
           +P + K    +E+   +GN+  C D+  +++ D     +EI
Sbjct: 3   IPKSAKSDYTKEQKDLVGNICQCKDFYKILNVDKKASPDEI 43


>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts homolog)
            family protein 6 protein.
          Length = 1186

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 461  FSGCCVQTTKRTPVIDNHACSNYFTTSIHSTC 366
            F G  + +     + D+ AC  +F+T  HS C
Sbjct: 1050 FDGTAIASAVLQKISDDLACRTFFSTHYHSIC 1081


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,177,919
Number of Sequences: 27780
Number of extensions: 264604
Number of successful extensions: 715
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)