Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O04
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   3.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.6  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   8.7  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 445 SRPQNAHQSLTTMPAATTSLPLF 377
           S PQ++  S +T PAA T+  ++
Sbjct: 67  SSPQHSGSSASTSPAARTTSSMY 89


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 38  WDQEPVFIRD 9
           WDQEP+ + D
Sbjct: 174 WDQEPIILAD 183


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 329 LILYCCFRVHQTSAVGQRSIRSYEDIPRNCLPEHFN 222
           +I + C  +  TSA+ +  +  + D  R+ +PE  N
Sbjct: 23  VICFVCKDITSTSALYRLKLYLFCDYDRDIIPEQKN 58


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 132 GNVIACNDYVALVHPDLDKDTEE 200
           GN ++C +  +L++ + D  T+E
Sbjct: 102 GNALSCKETFSLLYYEFDVATKE 124


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -1

Query: 540 QECPHCR 520
           QECP+CR
Sbjct: 6   QECPYCR 12


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,513
Number of Sequences: 438
Number of extensions: 2786
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)