Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O03
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    28   1.00 
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    28   1.00 
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    27   1.3  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    27   1.7  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    27   2.3  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   4.0  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    25   5.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   5.3  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   7.0  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    25   9.3  
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    25   9.3  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   9.3  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    25   9.3  

>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 276 FAIEKDKYEILLNYIEAMKTVPAVKSYYLSAETHAK 169
           + + + K+   +N + A+K   A+   YLSA  HAK
Sbjct: 239 YGLSRRKHTFKINLLSALKHATALPVIYLSAIIHAK 274


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 365 YTVISLVG*IILCGHFWNALKHYHCLVKLSLPLKRTNMK 249
           Y        +I CGH   +LKHY  L+  SL  K  +++
Sbjct: 337 YLAFETTAYLISCGHSITSLKHYKELILSSLRYKDVSLR 375


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -2

Query: 522 QDKLLVESFSAVQSAWYTASFNAQALQPTMVETYHKGLETLQKELENRGTKYLH 361
           Q +L  E+ SA++S  Y A+  A+        +   G+E+ + ELEN+ TK  H
Sbjct: 176 QCELKKENLSAMRSMLYMANTYAKDDTENHSPSAQIGIESSEDELENKITKGEH 229


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 318 KMATEYNLPNQADHRVSTLYRGFQ 389
           K++T  +  N   H++STLYRG Q
Sbjct: 407 KISTLISNTNATQHKLSTLYRGMQ 430


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 329 CGHFWNALKHYHCLVKLSLPLKRTN 255
           C  FW  +K ++C V++  P+   N
Sbjct: 630 CMRFWYVVKRHNCTVRVESPVNELN 654


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 264  FQWQTQFYQAMVMLQSVPKMATEYNLP-NQADHRVSTLYR 380
            ++WQTQFY A  +   + ++  E   P      R+S L R
Sbjct: 1211 YRWQTQFYAATCLKTCISEVMAENKEPAKYLISRISDLVR 1250


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 23  QIVLYCFQIEQIFNSILFY 79
           Q+   CFQ +QIF S++F+
Sbjct: 333 QLTGKCFQAQQIFRSLVFF 351


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -3

Query: 419  TKVSKHCKRNLKTAVQSTYTVISLVG*IILCGHFWNALKHYHCLVKLSLP 270
            T++    + N +  ++S    I ++    + GHF    +HY+  +K SLP
Sbjct: 1484 TELHGFIRANAEMVLRSPECFIKILKDCCVLGHFTPESEHYYLELKESLP 1533


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -3

Query: 515 SYLLSLFQQSNQHGILHLSMLKHSNLLWSKLTTKVSKHCKRNL 387
           S+L  L Q S Q      S +K +   WSKL T+ S   KRNL
Sbjct: 723 SFLSDLVQYSFQPD----SFIKEAADRWSKLVTEKSIERKRNL 761


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 444 QPTMVETYHKGLETLQKELENRGTK 370
           Q ++ ETY K +  L++ELE  G +
Sbjct: 64  QKSIRETYEKDINKLKRELEELGVE 88


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 504 ESFSAVQSAWYTASFN-AQALQPTMVETYHKGLETLQKELE 385
           + FSAV S  YTASF+ +  +      TY K  + L K+L+
Sbjct: 88  DEFSAVPSKKYTASFDQSGTIGFDKESTYWKLEKILDKDLD 128


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 426 TYHKGLETLQKELENRGTKYLHGD 355
           T HK +E L+ E+   G  Y  GD
Sbjct: 147 TEHKDIEQLETEINESGINYKIGD 170


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 15  FVYKLYFIVFKSNKF 59
           F YKL FIVF SN F
Sbjct: 101 FQYKLLFIVFLSNLF 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,123
Number of Sequences: 5004
Number of extensions: 46119
Number of successful extensions: 135
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)