Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_O03
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0674 + 5755523-5755613,5756325-5756366,5756830-5756915,575... 36 0.027
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 34 0.062
10_08_0691 - 19915566-19915973,19916050-19916409 30 1.3
08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686 29 1.8
10_08_0719 + 20097639-20097968,20098048-20098410 29 3.1
09_06_0206 - 21580240-21580467,21580544-21580591,21581533-215823... 28 4.1
03_06_0046 - 31263294-31263610,31263873-31264026,31265514-312655... 28 5.4
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805... 28 5.4
02_01_0230 - 1532648-1532768,1533359-1533476,1533540-1533593,153... 28 5.4
>12_01_0674 +
5755523-5755613,5756325-5756366,5756830-5756915,
5757008-5757079,5757450-5757525,5757765-5757826,
5758119-5758178,5758293-5758394
Length = 196
Score = 35.5 bits (78), Expect = 0.027
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = -2
Query: 417 KGLETLQKELENRGTKYLHGDQPGWVDYTLWPFLERFEALPLLGKTEFAIEKDKYEILLN 238
KG ++K LE +KY GD+ D L P + G T F I+ KY IL
Sbjct: 119 KGFRAIEKLLEGCRSKYATGDEVQLADVFLAPQIHA-------GITRFQIDMSKYPILAR 171
Query: 237 YIEAMKTVPAVKS 199
+ +A +PA ++
Sbjct: 172 FYKAYMELPAFQA 184
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 34.3 bits (75), Expect = 0.062
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Frame = -2
Query: 441 PTMVETYHKGLETLQKELEN-----RGTKYLHGDQPGWVDYTLWPFLERFEALPLLGKTE 277
PT + H+ LE L+K LE G++YL GD + D +PF F A P
Sbjct: 130 PTNQQVVHESLEKLKKVLETYEARLSGSRYLAGDFLSFADLNHFPFTFYFMATPC----- 184
Query: 276 FAIEKDKYEILLNYIEAMKTVPAVKSYYLSAETHAKF 166
A D Y + + E + + P++K +SA KF
Sbjct: 185 -ASLFDAYPHVKAWWEGLMSRPSIKK--ISANMPTKF 218
>10_08_0691 - 19915566-19915973,19916050-19916409
Length = 255
Score = 29.9 bits (64), Expect = 1.3
Identities = 24/88 (27%), Positives = 39/88 (44%)
Frame = -2
Query: 384 NRGTKYLHGDQPGWVDYTLWPFLERFEALPLLGKTEFAIEKDKYEILLNYIEAMKTVPAV 205
++G KY GD+ G++D L FL +A+ E +++ K L + + PAV
Sbjct: 169 SQGKKYFGGDKIGYLDIALGSFLGWIKAVEKFAGVEL-LDEAKVPNLAAWADRFCAHPAV 227
Query: 204 KSYYLSAETHAKFIESRAKGDANYNMLD 121
A+ K +E K A+ LD
Sbjct: 228 VDAMPDAD---KLVEFAVKHAASMKALD 252
>08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686
Length = 959
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Frame = -3
Query: 188 RRRLTLNLLSPVPREMPTTICWILAPPAVCARGRRRNKII------YC*KFVRFENNKVQ 27
R L LNLL+P +P C LA P G + C FVRFE + VQ
Sbjct: 60 RLDLDLNLLAPA---VPDPGCGDLALPGASKPGEKAAATTSNTDEELCAHFVRFEEDMVQ 116
Query: 26 FVNK 15
F++K
Sbjct: 117 FISK 120
>10_08_0719 + 20097639-20097968,20098048-20098410
Length = 230
Score = 28.7 bits (61), Expect = 3.1
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = -2
Query: 411 LETLQKELENRGTKYLHGDQPGWVDYTLWPFLERFEALPLLGKTEFAIEKDKYEILLNYI 232
LETL++ + +G + GD G+VD L FL +A L F ++ + +L +
Sbjct: 138 LETLEEAM--KGKVFFGGDSAGYVDVALGGFLGWIKAAEALAGVAF-LDGARTPLLAAWA 194
Query: 231 EAMKTVPAVKSYYLSAETHAKF 166
+ A K S E +F
Sbjct: 195 ARFSALEAAKEAIPSVERLREF 216
>09_06_0206 -
21580240-21580467,21580544-21580591,21581533-21582321,
21582779-21582979
Length = 421
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -2
Query: 312 RFEALPLLGKTEFAIEKDKYEILLNYIEAMKTVPAVKSYYLSAETHAKFIESRAKGD 142
RF A LG F+ Y+ LLN A+K + + Y +A + + + AKGD
Sbjct: 43 RFVAQRKLGWGNFSTVWLAYDTLLNRFVALKIQKSARDYAQAALHEIELLSAIAKGD 99
>03_06_0046 -
31263294-31263610,31263873-31264026,31265514-31265551,
31265941-31266631
Length = 399
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 294 LLGKTEFAIEKDKYEILLNYIEAMKTVPAVKSYYLSAETHAKFI 163
LL ++ + DKY+ +LN I A+ + YY H FI
Sbjct: 247 LLDSSQISAASDKYDAILNKIIALDNSVLLIHYYPKMFVHVYFI 290
>02_05_1337 -
35780076-35780290,35780377-35780408,35780490-35780584,
35780670-35780743,35780851-35780986,35781072-35781135,
35781333-35781395,35781514-35781656,35781752-35781889,
35781973-35782094,35782210-35782375,35782647-35782652,
35782988-35783059,35783241-35783348,35783719-35783848,
35783964-35784070,35784896-35785005,35785302-35785435,
35785528-35785982,35786068-35786595
Length = 965
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 337 IYPTRLITV*VLCTAVFKFLLQCF-ETFVVSFDHSRLECLSIER 465
I PTR +T V K ++Q F ET+ + H+ L CL+++R
Sbjct: 438 IQPTRELTFPVDEGGTVKSVVQYFQETYGFAIQHTYLPCLTVQR 481
>02_01_0230 -
1532648-1532768,1533359-1533476,1533540-1533593,
1533788-1533880,1533960-1534152,1534361-1534461,
1534561-1534600,1534683-1534730,1535341-1535523,
1535623-1535688
Length = 338
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 282 FYQAMVMLQS--VPKMATEYNLPNQADHRVSTLYRGFQVPFAMFRDLCGKF 428
FY + L +PK+ T Y + N + TL+R + P+ + R++ G F
Sbjct: 265 FYPKLAELSKTFLPKLETVYYIHNFKGLKGGTLFRCYPGPWKVLRNIGGSF 315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,120,145
Number of Sequences: 37544
Number of extensions: 282357
Number of successful extensions: 672
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -