Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O03
         (532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    24   0.84 
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    24   0.84 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.9  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   7.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.9  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 24.2 bits (50), Expect = 0.84
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -3

Query: 152 PREMPTTICW-ILAPPAVCARGRRRNKIIYC 63
           P  +P  +C  I AP  VC  G  RNK   C
Sbjct: 55  PNVVPKPLCIKICAPGCVCRLGYLRNKKKVC 85


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 24.2 bits (50), Expect = 0.84
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -3

Query: 152 PREMPTTICW-ILAPPAVCARGRRRNKIIYC 63
           P  +P  +C  I AP  VC  G  RNK   C
Sbjct: 55  PNVVPKPLCIKICAPGCVCRLGYLRNKKKVC 85


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 131 ICWILAPPAVC 99
           ICW +  PA+C
Sbjct: 493 ICWTITTPAIC 503


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 131 ICWILAPPAVC 99
           ICW +  PA+C
Sbjct: 546 ICWTITTPAIC 556


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +1

Query: 352 LITV*VLCTAVFKFLLQCFETFVVSFDHSRLECLSIERC 468
           L  V  +  AVF   + C + ++ + +H R      +RC
Sbjct: 313 LTPVSTMLPAVFAKTVSCIDPWIYAINHPRYRQELQKRC 351


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 197 YDLTAGTVFIASM*FSKISYLSFSMANSVLP 289
           Y LTAGTV +     + ++  +F  A   LP
Sbjct: 411 YRLTAGTVVLLHTWIAGLNEENFKDAKKYLP 441


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +1

Query: 352 LITV*VLCTAVFKFLLQCFETFVVSFDHSRLECLSIERC 468
           L  V  +  AVF   + C + ++ + +H R      +RC
Sbjct: 313 LTPVSTMLPAVFAKTVSCIDPWIYAINHPRYRQELQKRC 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,498
Number of Sequences: 438
Number of extensions: 3160
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)