Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O01
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    29   0.38 
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom...    27   2.0  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   3.5  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    26   4.7  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    26   4.7  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   8.2  

>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 407 LCTYNYSINYNTKAYKVNCKRQMLYHYDDK 318
           +C Y  S++YN +   +N    ML+  DD+
Sbjct: 411 MCRYKLSLDYNVQMTSINATSDMLFAADDR 440


>SPAC1296.04 |mug65||spore wall assembly protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 413 EALCTYNYSINYNTKAYKVNCKRQMLYHY 327
           EAL T+  S + + K Y  NCK+ +L ++
Sbjct: 183 EALATFLASASIDEKVYVKNCKKDLLKNF 211


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 8/38 (21%), Positives = 22/38 (57%)
 Frame = -3

Query: 434 TFITYLFEALCTYNYSINYNTKAYKVNCKRQMLYHYDD 321
           +F+  LF+ LC++++S+ + + +  +   + + Y   D
Sbjct: 127 SFLLSLFDLLCSHHFSVEFTSISLIIKSSQWLFYTLSD 164


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 413 EALCTYNYSINYNTKAYKVNCKRQMLYHYDDKDINFDTELC 291
           E    +NY I++  K   +N K   LY    K IN   ++C
Sbjct: 249 EITSKHNYDIDFKYKWLCINEKCNKLYGRHSKSINPQKQVC 289


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 338 LYHYDDKDINFDTELCSVYCFKCFVFFGSQIKTL 237
           L+HY   +INFD E    Y    + F  + +K L
Sbjct: 115 LFHYHPGEINFDEENWEAYRAANYAFAEAIVKNL 148


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -3

Query: 392 YSINYNTKAYKVNCKRQMLYHYDDKD-INFDTELCSV 285
           Y + Y T      C  + + HY D D +N+  E+ ++
Sbjct: 313 YGVGYRTNPLSFTCGCEGVIHYMDADFVNYRGEITTI 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,487
Number of Sequences: 5004
Number of extensions: 47486
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)