Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O01
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1219 - 35490475-35491635                                         29   2.1  
06_03_0029 - 15673494-15673871,15674193-15674375,15674425-156744...    28   6.3  

>01_06_1219 - 35490475-35491635
          Length = 386

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 72  PFNRKTSTAGYRSPPKNF*EEPV*GHPHPAGSR 170
           P++ K +  G+RSPP  +   P+ G  +P+ S+
Sbjct: 239 PWSAKPAVCGFRSPPAQYAPSPLAGASNPSSSQ 271


>06_03_0029 -
           15673494-15673871,15674193-15674375,15674425-15674478,
           15674592-15674756,15676478-15676720,15676810-15676896,
           15676995-15677225
          Length = 446

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -3

Query: 434 TFITYLFEALCTYNYSIN--YNTKAYKVNCK 348
           T+ T  FE +CTYN+  +    T  Y  NC+
Sbjct: 257 TYWTVEFEVICTYNFQTDAYQETGCYNHNCR 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,947,266
Number of Sequences: 37544
Number of extensions: 261572
Number of successful extensions: 516
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)