Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_O01
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    28   4.3  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    28   4.3  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    28   4.3  
U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AC024770-5|AAK84605.2|  684|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 246 KNINCFLFLITSNIHITIISVCQACRGNPLDAGGLKP 136
           K+  C       N+H ++  +C++CR     + G+KP
Sbjct: 44  KSFKCITGRDDCNVHYSMHQICRSCRHKKCLSNGMKP 80


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 246 KNINCFLFLITSNIHITIISVCQACRGNPLDAGGLKP 136
           K+  C       N+H ++  +C++CR     + G+KP
Sbjct: 62  KSFKCITGRDDCNVHYSMHQICRSCRHKKCLSNGMKP 98


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 246 KNINCFLFLITSNIHITIISVCQACRGNPLDAGGLKP 136
           K+  C       N+H ++  +C++CR     + G+KP
Sbjct: 44  KSFKCITGRDDCNVHYSMHQICRSCRHKKCLSNGMKP 80


>U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical
           protein F35A5.2 protein.
          Length = 111

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 329 YDDKDINFDTELCSVYCFKCFVFFGSQIKTLIVF 228
           Y+D D+   T  CS Y F CF   GSQI  +  F
Sbjct: 43  YNDNDV---TSSCSGYQFDCFDSAGSQIGDVKTF 73


>AC024770-5|AAK84605.2|  684|Caenorhabditis elegans Hypothetical
           protein Y39H10A.6 protein.
          Length = 684

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 16  NTEGTQLCNNSLTFLFPSIHSIERRPLLDIGLPQRI 123
           N EGT +C   +T +  ++H  ER  L    L  R+
Sbjct: 436 NLEGTTICKEEVTIIHMTVHPSERLVLTTTELNLRL 471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,072,546
Number of Sequences: 27780
Number of extensions: 267314
Number of successful extensions: 636
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)